View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14154_high_4 (Length: 438)

Name: NF14154_high_4
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14154_high_4
NF14154_high_4
[»] chr5 (1 HSPs)
chr5 (29-430)||(11235958-11236360)
[»] chr3 (3 HSPs)
chr3 (29-430)||(52610158-52610560)
chr3 (23-108)||(11761565-11761650)
chr3 (154-203)||(11761666-11761715)
[»] chr8 (4 HSPs)
chr8 (121-424)||(23473152-23473456)
chr8 (29-430)||(23482578-23482958)
chr8 (144-430)||(34905890-34906177)
chr8 (342-377)||(35799913-35799948)
[»] chr6 (2 HSPs)
chr6 (1-67)||(34959953-34960019)
chr6 (94-161)||(34960017-34960084)
[»] chr7 (1 HSPs)
chr7 (146-290)||(38645500-38645645)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 430
Target Start/End: Complemental strand, 11236360 - 11235958
Alignment:
Q  29 cgaaaatgtgtatacaaaactcctacaatacactttagaggagggaaggaaggtgaaactcacaaagaaggagaaaaatgaagtaaatgaccgtcaacca 128  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||| |||||||| ||||||||||    
T  11236360 cgaaaatgcgtatacaaaactcctacaatacactttagaggagggaaggaagatgaaactcaacaagaaggagaaaaatggagtaaatggccgtcaacca 11236261  T
Q  129 cttttccggtgcggtagaggtgaactccggcacggtggtcgccggcaaagttgctccgattgcaaaataaacata-aggttttgttgctgacatcatgag 227  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||  ||||||||||||||||||| |||    
T  11236260 cttttccggcgcggcagaggtgaactccggcacggtggtcgccgacaaagttgctactattgcaaaataaacataggggttttgttgctgacatcacgag 11236161  T
Q  228 gaagaatatggtgggtttggttttcccaatggcaactcacggtggccggaaaacaagagagaaggggaagatctcaaaattttaagttctccaatctnnn 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||| ||||||       
T  11236160 gaagaatatggtgggtttggttttcccaatggcaactcacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttcttcaatctaaa 11236061  T
Q  328 nnnnnnttgagggcttttgtagaggaagaagagaggaattcaatggtggtggcgggaattttaaaggaggctggacggaagagttatggtgaccggaaat 427  Q
          |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| |    
T  11236060 aataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccggacggaaaagttatggtgaccggaagt 11235961  T
Q  428 tgg 430  Q
    |||    
T  11235960 tgg 11235958  T

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Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 29 - 430
Target Start/End: Complemental strand, 52610560 - 52610158
Alignment:
Q  29 cgaaaatgtgtatacaaaactcctacaatacactttagaggagggaaggaaggtgaaactcacaaagaaggagaaaaatgaagtaaatgaccgtcaacca 128  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||  | |||||||||||||| |||||||| ||||||||||    
T  52610560 cgaaaatgagtatacaaaactcctacaatgcactttagaggagggaatgaagatgaaactcatcacgaaggagaaaaatggagtaaatggccgtcaacca 52610461  T
Q  129 cttttccggtgcggtagaggtgaactccggcacggtggtcgccggcaaagttgctccgattgcaaaataaacata-aggttttgttgctgacatcatgag 227  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  52610460 cttttccggcgcggtagaggtgaactccggcacagtggccgccgacaaagttgctccgattgcaaaataaacataggggttttgttgctgacatcatgag 52610361  T
Q  228 gaagaatatggtgggtttggttttcccaatggcaactcacggtggccggaaaacaagagagaaggggaagatctcaaaattttaagttctccaatctnnn 327  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| || || |||||||||||       
T  52610360 aaagaatatggtgggtttggttttccaaatggcaactcacggtggccggaaaacaagaaagaagggggagatctcaaaaattaaacttctccaatctata 52610261  T
Q  328 nnnnnnttgagggcttttgtagaggaagaagagaggaattcaatggtggtggcgggaattttaaaggaggctggacggaagagttatggtgaccggaaat 427  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||| ||||||||| |    
T  52610260 aataaattgagggcttttgtagaggaagaagagaggaattcaatggtggtggcggggattttaaaggaggccggacggaaaatttatgttgaccggaagt 52610161  T
Q  428 tgg 430  Q
    |||    
T  52610160 tgg 52610158  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 11761565 - 11761650
Alignment:
Q  23 ataattcgaaaatgtgtatacaaaactcctacaatacactttagaggagggaaggaaggtgaaactcacaaagaaggagaaaaatg 108  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  11761565 ataatccgaaaatccgtatacaaaactcctacaatacactttagaggagggaaggaagatgaaactcaccaagaaggagaaaaatg 11761650  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 11761666 - 11761715
Alignment:
Q  154 tccggcacggtggtcgccggcaaagttgctccgattgcaaaataaacata 203  Q
    |||||||||||||| || | ||||||||||||||||||||||||||||||    
T  11761666 tccggcacggtggttgctgacaaagttgctccgattgcaaaataaacata 11761715  T

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Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 121 - 424
Target Start/End: Original strand, 23473152 - 23473456
Alignment:
Q  121 gtcaaccacttttccggtgcggtagaggtgaactccggcacggtggtcgccggcaaagttgctccgattgcaaaataaacata-aggttttgttgctgac 219  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  23473152 gtcaaccacttttctggcacggtagaggtgaactccggcacggtggtcgccgacaaagttgctccaattgcaaaataaacatcgaggttttgttgctgac 23473251  T
Q  220 atcatgaggaagaatatggtgggtttggttttcccaatggcaactcacggtggccggaaaacaagagagaaggggaagatctcaaaattttaagttctcc 319  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |  |||||||| || || ||||||    
T  23473252 atcatgaggaagaatatgatgggtttgattttcccaatggcaactcacagtggccggaaaacaagagagaagggggaagtctcaaaaattaaacttctcc 23473351  T
Q  320 aatctnnnnnnnnnttgagggcttttgtagaggaagaagagaggaattcaatggtggtggcgggaattttaaaggaggctggacggaagagttatggtga 419  Q
    |||||         ||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||| |||||||||||    
T  23473352 aatctaaaaataaattgagggcttttgtagaggaagaagagaggaattcaacggtggtggcagggattttaaaggaggccggacggaatagttatggtga 23473451  T
Q  420 ccgga 424  Q
    |||||    
T  23473452 ccgga 23473456  T

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Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 430
Target Start/End: Original strand, 23482578 - 23482958
Alignment:
Q  29 cgaaaatgtgtatacaaaactcctacaatacactttagaggagggaaggaaggtgaaactcacaaagaaggagaaaaatgaagtaaatgaccgtcaacca 128  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||  |||||||||    
T  23482578 cgaaaatgcgtctacaaaactcctacaatacactttagaggagggaaggaagatgaaactcaccaagaaggagaaaaatggagtaaatggtcgtcaacca 23482677  T
Q  129 cttttccggtgcggtagaggtgaactccggcacggtggtcgccggcaaagttgctccgattgcaaaataaacataagg-ttttgttgctgacatcatgag 227  Q
     ||||||                     ||||||||||||||||  ||||||||| | ||||||||||||||||| || |||||||||||||||||||||    
T  23482678 attttcc---------------------ggcacggtggtcgccgataaagttgctactattgcaaaataaacataggggttttgttgctgacatcatgag 23482756  T
Q  228 gaagaatatggtgggtttggttttcccaatggcaactcacggtggccggaaaacaagagagaaggggaagatctcaaaattttaagttctccaatctnnn 327  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||| ||||||       
T  23482757 gaagaatatggtgggtttggtttttccaatggcaactcacggtggccggaaaacaagagagaagggg-agatctcaaaaattaaacttcttcaatctaaa 23482855  T
Q  328 nnnnnnttgagggcttttgtagaggaagaagagaggaattcaatggtggtggcgggaattttaaaggaggctggacggaagagttatggtgaccggaaat 427  Q
          |||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||  ||||||| |||||||||||| |||| |    
T  23482856 aataaattgagggcttttgtagagaaagaagagaggaattcaatggtggtggtggggattttaaaggaggccagacggaaaagttatggtgactggaagt 23482955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 144 - 430
Target Start/End: Original strand, 34905890 - 34906177
Alignment:
Q  144 agaggtgaactccggcacggtggtcgccggcaaagttgctccgattgcaaaataaacataagg-ttttgttgctgacatcatgaggaagaatatggtggg 242  Q
    |||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  34905890 agaggtgaactctggcacggtgatcgccaacaaagttgctccgattgcaaaataaacataggggttttgttgctgacatcatgaggaagaatatgttggg 34905989  T
Q  243 tttggttttcccaatggcaactcacggtggccggaaaacaagagagaaggggaagatctcaaaattttaagttctccaatctnnnnnnnnnttgagggct 342  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| ||| || || |||||||||||         |||| ||||    
T  34905990 tttggttttctcaatggcaactcacggtggccgaaaaacaagagagaagggggagatctcgaaaattaaacttctccaatctaaaaaaaaattgatggct 34906089  T
Q  343 tttgtagaggaagaagagaggaattcaatggtggtggcgggaattttaaaggaggctggacggaagagttatggtgaccggaaattgg 430  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||| || ||||||||||||||||| ||||    
T  34906090 tttgtagaggaagaagagaggaattcaatggtgatggaggggattttaaaggaggccggacgaaaaagttatggtgaccggaacttgg 34906177  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 377
Target Start/End: Complemental strand, 35799948 - 35799913
Alignment:
Q  342 ttttgtagaggaagaagagaggaattcaatggtggt 377  Q
    |||||||||||||||||||||||||| |||||||||    
T  35799948 ttttgtagaggaagaagagaggaatttaatggtggt 35799913  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34959953 - 34960019
Alignment:
Q  1 aaacttcatactcctataacatataattcgaaaatgtgtatacaaaactcctacaatacactttaga 67  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  34959953 aaacttcatactcctatagcacataattcgaaaatgtgtatacaaaactcctacaatacactttaga 34960019  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 34960017 - 34960084
Alignment:
Q  94 agaaggagaaaaatgaagtaaatgaccgtcaaccacttttccggtgcggtagaggtgaactccggcac 161  Q
    ||||||||||| |||||||||||||| |||||||||||| |||| || ||||||||||||||||||||    
T  34960017 agaaggagaaatatgaagtaaatgactgtcaaccactttcccggcgcagtagaggtgaactccggcac 34960084  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 38645645 - 38645500
Alignment:
Q  146 aggtgaactccggcacggtggtcgccggcaaagttgctccgattgcaaaataaacata-aggttttgttgctgacatcatgaggaagaatatggtgggtt 244  Q
    ||||||| ||||||| ||||||||||| ||| |||||||||||||  ||| ||||||| ||||||| |||  || ||||  |||||| | |||||||| |    
T  38645645 aggtgaattccggcaaggtggtcgccgacaatgttgctccgattgtgaaacaaacatagaggttttattgtagatatcacaaggaaggagatggtgggat 38645546  T
Q  245 tggttttcccaatggcaactcacggtggccggaaaacaagagagaa 290  Q
    | ||||||| || ||   ||||||||||||| |||  |||||||||    
T  38645545 tagttttccaaacggtggctcacggtggccgaaaagtaagagagaa 38645500  T

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