View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14154_high_6 (Length: 372)
Name: NF14154_high_6
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 372
Target Start/End: Complemental strand, 25063753 - 25063386
Alignment:
| Q |
5 |
ctcctcaacttatgccaagactctgcaatcggcttattaacaacatcaccagcaacagattcttcctctcccaatttatcttcctttctcttctgtacta |
104 |
Q |
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| T |
25063753 |
ctcctcaacttctgccaagactctgcaatcggcttattaacaacatcaccagcaacagattcttcctctcccaatttatcttcctttctcttctgtacta |
25063654 |
T |
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| Q |
105 |
atcccaacttattccacaacttgccccatttgtgcaacttgttcgttcccttttgatcatttccaatttcaacgtcacaagcttccttagaagcagaccc |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
25063653 |
atcccaacttattccacaacttgccccatttgtgaaacttgtttgttcccttttgatcatttccaatttcaacatcacaagcttccttagaagcagatcc |
25063554 |
T |
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| Q |
205 |
tgttctacaatcagattgaacattaacactattcttaggtttcaaattggcacccctcaaatcttcctcggtgatcaaaacctttgccccgtagaataac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
25063553 |
tgttctacaatcagattgaacattaacactattcttaggtttcaaattagcatccctcaaatcttcctcagtgatcaaaacctttgcaccgtagaataac |
25063454 |
T |
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| Q |
305 |
tcagttgtagctggagaacccttggcattagatatcactctcacttcatcaacatctccgatcaccgc |
372 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
25063453 |
tcagttgtagctggagaaaccttggcattagatatcactctcaattcatcaacatctccaatcaccgc |
25063386 |
T |
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