View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14154_high_7 (Length: 313)
Name: NF14154_high_7
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 31686883 - 31687186
Alignment:
| Q |
7 |
ttcagaacaccaagcaaccttcttctgaaattgccgagaatgcattctctcatgtactgcacaaatagcttgaggtgttaaaataataacagtaggatgg |
106 |
Q |
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| T |
31686883 |
ttcagaacaccaagcaaccttcttctgaaattgccgagaatgcattctctcatgtactgcacaaatagcttgaggtgttaaaataataacagtaggatgg |
31686982 |
T |
|
| Q |
107 |
atgtttggttttgaaacagtacaatttgataaagtaggagtgacatatgggttggtctattactagattacccggtgtcagatttggatcctctgtgtga |
206 |
Q |
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| T |
31686983 |
atgtttggttttgaaacagtacaatttgataaagtaggagtgacatatgggttgatctattactagattacccggtgtcagatttggatcctctgtgtga |
31687082 |
T |
|
| Q |
207 |
gggatgcttgttaagagttaagtgcagcatagattataatgataaaatcaataacttcaagtatgtaagataaagtgaaagttgtaatcccttagacctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31687083 |
gggatgcttgttaagagttaagtgcagcatagattataatgataaaatcaataacttcaagtttgtaagataaagtgaaagttgtaatcccttagacctt |
31687182 |
T |
|
| Q |
307 |
ctcc |
310 |
Q |
| |
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|||| |
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| T |
31687183 |
ctcc |
31687186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 32794188 - 32793885
Alignment:
| Q |
7 |
ttcagaacaccaagcaaccttcttctgaaattgccgagaatgcattctctcatgtactgcacaaatagcttgaggtgttaaaataataacagtaggatgg |
106 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |
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| T |
32794188 |
ttcagaacaccgagcaaccttcttctgaaattgccaagaatgcattctctcatgtactgcacaaatagcttaaggtgttaaaatgataacagtaggattg |
32794089 |
T |
|
| Q |
107 |
atgtttggttttgaaacagtacaatttgataaagtaggagtgacatatgggttggtctattactagattacccggtgtcagatttggatcctctgtgtga |
206 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
32794088 |
atgtttggttctgaaacagtacaatttgataaagtaggagtgacatatgggttgatctattactagatgacccggtgtcggatttggatcctctgtgtga |
32793989 |
T |
|
| Q |
207 |
gggatgcttgttaagagttaagtgcagcatagattataatgataaaatcaataacttcaagtatgtaagataaagtgaaagttgtaatcccttagacctt |
306 |
Q |
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|||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
32793988 |
gggatgctcgttaagagttaagtgcagcgttgattataatgataaaatcaataacttcaagtatgtaagataaagtgaaagttgtaatcactttgacctt |
32793889 |
T |
|
| Q |
307 |
ctcc |
310 |
Q |
| |
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|||| |
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|
| T |
32793888 |
ctcc |
32793885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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