View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14154_low_1 (Length: 543)

Name: NF14154_low_1
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14154_low_1
NF14154_low_1
[»] chr4 (48 HSPs)
chr4 (202-356)||(4490871-4491025)
chr4 (201-353)||(40438889-40439041)
chr4 (208-351)||(44957180-44957323)
chr4 (208-354)||(39103800-39103946)
chr4 (208-354)||(53973718-53973864)
chr4 (202-354)||(12756001-12756154)
chr4 (210-354)||(31296782-31296926)
chr4 (201-350)||(52405536-52405685)
chr4 (201-353)||(19526724-19526876)
chr4 (201-363)||(19594921-19595083)
chr4 (210-355)||(49286873-49287017)
chr4 (201-355)||(31975547-31975701)
chr4 (201-333)||(39953838-39953970)
chr4 (201-356)||(15060554-15060709)
chr4 (208-307)||(34927364-34927463)
chr4 (220-359)||(595545-595684)
chr4 (215-310)||(34584451-34584546)
chr4 (209-353)||(52940480-52940625)
chr4 (220-340)||(4695320-4695439)
chr4 (209-354)||(52324228-52324374)
chr4 (227-352)||(16601611-16601736)
chr4 (209-356)||(30168361-30168509)
chr4 (209-353)||(39380662-39380805)
chr4 (209-361)||(18052199-18052353)
chr4 (203-351)||(32570370-32570517)
chr4 (220-299)||(15033483-15033561)
chr4 (304-355)||(32737546-32737597)
chr4 (209-354)||(337396-337542)
chr4 (209-329)||(9579928-9580048)
chr4 (209-329)||(9585623-9585743)
chr4 (220-353)||(13548677-13548810)
chr4 (208-360)||(19842431-19842586)
chr4 (229-350)||(38961246-38961367)
chr4 (203-350)||(39412426-39412576)
chr4 (215-353)||(1792096-1792233)
chr4 (320-359)||(14802706-14802745)
chr4 (304-363)||(46688093-46688151)
chr4 (244-354)||(25607573-25607683)
chr4 (214-351)||(27635741-27635878)
chr4 (201-283)||(27950510-27950592)
chr4 (239-354)||(21514988-21515103)
chr4 (220-255)||(19627697-19627732)
chr4 (209-354)||(6807255-6807401)
chr4 (214-350)||(23639503-23639639)
chr4 (239-355)||(36569646-36569762)
chr4 (303-355)||(20142945-20142997)
chr4 (201-360)||(44998404-44998562)
chr4 (203-350)||(48262565-48262711)
[»] chr5 (28 HSPs)
chr5 (201-354)||(5204873-5205026)
chr5 (201-354)||(40756797-40756950)
chr5 (201-354)||(4429418-4429571)
chr5 (202-353)||(5140924-5141075)
chr5 (201-354)||(39939320-39939473)
chr5 (201-353)||(23690755-23690907)
chr5 (220-311)||(27876210-27876301)
chr5 (201-327)||(13544345-13544471)
chr5 (209-350)||(23408255-23408396)
chr5 (228-353)||(4039753-4039878)
chr5 (227-352)||(19189107-19189231)
chr5 (209-362)||(19238785-19238937)
chr5 (239-356)||(25684070-25684187)
chr5 (209-353)||(16602625-16602769)
chr5 (220-354)||(2011332-2011465)
chr5 (209-356)||(28770209-28770354)
chr5 (201-359)||(39540974-39541132)
chr5 (214-354)||(2148394-2148534)
chr5 (209-354)||(16432911-16433058)
chr5 (264-354)||(7080120-7080210)
chr5 (220-350)||(23259020-23259149)
chr5 (304-350)||(43393113-43393159)
chr5 (209-283)||(777407-777483)
chr5 (265-354)||(2021680-2021769)
chr5 (320-353)||(5513047-5513080)
chr5 (320-353)||(12362731-12362764)
chr5 (214-283)||(28204842-28204911)
chr5 (272-356)||(4366787-4366871)
[»] chr6 (25 HSPs)
chr6 (201-356)||(1705603-1705758)
chr6 (208-353)||(24248804-24248949)
chr6 (201-355)||(19473669-19473823)
chr6 (208-351)||(1371411-1371555)
chr6 (208-351)||(1379159-1379303)
chr6 (210-353)||(10965719-10965862)
chr6 (208-351)||(2994586-2994729)
chr6 (217-354)||(21181138-21181275)
chr6 (201-362)||(1339365-1339526)
chr6 (201-357)||(21293786-21293942)
chr6 (252-351)||(14506918-14507017)
chr6 (201-351)||(24159717-24159876)
chr6 (203-353)||(10888066-10888216)
chr6 (201-256)||(14507717-14507772)
chr6 (238-353)||(7344606-7344722)
chr6 (209-353)||(26315447-26315591)
chr6 (209-354)||(3954167-3954314)
chr6 (201-350)||(6974954-6975103)
chr6 (203-354)||(16892902-16893052)
chr6 (320-358)||(34196182-34196220)
chr6 (320-354)||(32871888-32871922)
chr6 (201-361)||(26810769-26810929)
chr6 (209-280)||(926612-926684)
chr6 (203-255)||(14872583-14872635)
chr6 (239-354)||(32519025-32519140)
[»] chr7 (35 HSPs)
chr7 (201-355)||(48460495-48460649)
chr7 (201-354)||(31759992-31760145)
chr7 (201-354)||(17833930-17834083)
chr7 (208-353)||(21919952-21920098)
chr7 (201-353)||(29689179-29689331)
chr7 (201-353)||(23182643-23182795)
chr7 (201-354)||(31743299-31743454)
chr7 (201-311)||(5215062-5215173)
chr7 (209-355)||(1343017-1343165)
chr7 (209-354)||(13806361-13806506)
chr7 (214-350)||(13806213-13806349)
chr7 (208-344)||(31311355-31311491)
chr7 (258-311)||(32670511-32670564)
chr7 (201-298)||(41769526-41769621)
chr7 (220-354)||(27800302-27800435)
chr7 (201-328)||(16200783-16200910)
chr7 (220-353)||(9682299-9682432)
chr7 (231-351)||(40379245-40379365)
chr7 (203-346)||(1583655-1583799)
chr7 (215-283)||(32823007-32823075)
chr7 (239-353)||(24505123-24505237)
chr7 (209-354)||(15090667-15090812)
chr7 (303-353)||(27569628-27569678)
chr7 (209-353)||(25866905-25867049)
chr7 (320-353)||(43750075-43750108)
chr7 (321-353)||(2088868-2088900)
chr7 (304-356)||(10209983-10210035)
chr7 (243-353)||(27130839-27130950)
chr7 (209-269)||(40856799-40856859)
chr7 (201-364)||(47219945-47220107)
chr7 (304-354)||(41311053-41311103)
chr7 (209-282)||(7574377-7574450)
chr7 (320-353)||(34363986-34364019)
chr7 (201-330)||(43541804-43541933)
chr7 (220-356)||(45857749-45857883)
[»] scaffold0131 (2 HSPs)
scaffold0131 (201-350)||(10672-10821)
scaffold0131 (4-36)||(10969-11001)
[»] chr8 (29 HSPs)
chr8 (201-354)||(7885876-7886029)
chr8 (201-357)||(29107808-29107963)
chr8 (208-311)||(44578916-44579019)
chr8 (220-357)||(31893606-31893743)
chr8 (208-290)||(38765001-38765083)
chr8 (209-354)||(27970011-27970156)
chr8 (214-353)||(34047683-34047823)
chr8 (201-308)||(9712663-9712770)
chr8 (220-355)||(12801105-12801239)
chr8 (227-355)||(12633185-12633314)
chr8 (209-353)||(32071503-32071650)
chr8 (209-354)||(42165166-42165311)
chr8 (209-356)||(2880192-2880338)
chr8 (304-363)||(417669-417728)
chr8 (279-352)||(15259318-15259391)
chr8 (227-352)||(35754737-35754862)
chr8 (209-355)||(17838599-17838744)
chr8 (220-353)||(41674484-41674616)
chr8 (295-356)||(19718699-19718760)
chr8 (209-277)||(5982449-5982517)
chr8 (239-353)||(28897196-28897310)
chr8 (320-354)||(41956-41990)
chr8 (320-354)||(32888031-32888065)
chr8 (201-283)||(38971534-38971616)
chr8 (201-283)||(39002632-39002714)
chr8 (244-353)||(39721970-39722080)
chr8 (209-255)||(40824561-40824607)
chr8 (227-283)||(7223553-7223609)
chr8 (318-353)||(26439894-26439930)
[»] chr3 (38 HSPs)
chr3 (201-353)||(29698577-29698729)
chr3 (208-351)||(43903074-43903217)
chr3 (216-356)||(32122169-32122309)
chr3 (216-307)||(8353331-8353422)
chr3 (201-353)||(27525192-27525341)
chr3 (201-355)||(27102848-27103011)
chr3 (203-353)||(28718184-28718333)
chr3 (201-353)||(14998405-14998556)
chr3 (209-350)||(52776710-52776856)
chr3 (209-353)||(29384684-29384827)
chr3 (209-355)||(46936657-46936802)
chr3 (209-361)||(4392972-4393126)
chr3 (209-353)||(32719985-32720129)
chr3 (209-355)||(15804256-15804403)
chr3 (220-351)||(5532319-5532449)
chr3 (209-355)||(26001193-26001338)
chr3 (209-358)||(36790150-36790298)
chr3 (220-356)||(42622606-42622744)
chr3 (209-351)||(51996680-51996822)
chr3 (209-351)||(11510984-11511125)
chr3 (320-356)||(21289186-21289222)
chr3 (239-358)||(48925704-48925823)
chr3 (320-355)||(27647476-27647511)
chr3 (239-355)||(33830528-33830644)
chr3 (209-353)||(45927220-45927364)
chr3 (320-356)||(52058878-52058914)
chr3 (244-354)||(44500413-44500523)
chr3 (228-347)||(48795701-48795820)
chr3 (320-354)||(5639668-5639702)
chr3 (320-358)||(11140242-11140280)
chr3 (313-359)||(44500129-44500175)
chr3 (214-287)||(15298506-15298578)
chr3 (264-357)||(38296885-38296978)
chr3 (320-357)||(42067575-42067612)
chr3 (202-354)||(52782415-52782567)
chr3 (320-353)||(53516954-53516987)
chr3 (239-354)||(2667483-2667598)
chr3 (304-360)||(28146672-28146728)
[»] chr2 (42 HSPs)
chr2 (201-353)||(17809283-17809435)
chr2 (201-353)||(41555679-41555831)
chr2 (202-353)||(15362725-15362875)
chr2 (201-350)||(713603-713753)
chr2 (208-353)||(38600072-38600217)
chr2 (201-353)||(39089870-39090025)
chr2 (220-362)||(22622690-22622832)
chr2 (230-353)||(15334337-15334460)
chr2 (208-307)||(34852597-34852697)
chr2 (201-311)||(40810460-40810571)
chr2 (209-329)||(15426285-15426405)
chr2 (203-354)||(42641107-42641258)
chr2 (209-354)||(8362667-8362813)
chr2 (201-349)||(45690755-45690902)
chr2 (284-353)||(4786362-4786431)
chr2 (209-354)||(40287967-40288111)
chr2 (203-355)||(38073363-38073514)
chr2 (227-350)||(12071158-12071281)
chr2 (214-332)||(2859605-2859723)
chr2 (201-358)||(40533246-40533403)
chr2 (209-356)||(15176339-15176486)
chr2 (209-353)||(15206003-15206143)
chr2 (209-354)||(25332891-25333038)
chr2 (239-360)||(37725544-37725665)
chr2 (214-287)||(25712984-25713057)
chr2 (202-350)||(37989034-37989181)
chr2 (209-354)||(4108306-4108450)
chr2 (272-354)||(11088215-11088297)
chr2 (209-354)||(33429132-33429276)
chr2 (239-353)||(36947775-36947889)
chr2 (295-358)||(37909374-37909437)
chr2 (320-354)||(20212526-20212560)
chr2 (209-354)||(21425211-21425356)
chr2 (1-35)||(39089671-39089705)
chr2 (209-255)||(41184584-41184630)
chr2 (320-353)||(7467120-7467153)
chr2 (320-356)||(11598111-11598148)
chr2 (201-282)||(26738103-26738184)
chr2 (209-282)||(33716557-33716630)
chr2 (239-358)||(2317131-2317250)
chr2 (320-360)||(4673975-4674015)
chr2 (320-352)||(42046076-42046108)
[»] chr1 (45 HSPs)
chr1 (208-356)||(7435510-7435658)
chr1 (201-354)||(44808403-44808556)
chr1 (201-353)||(40054588-40054740)
chr1 (201-352)||(38207786-38207936)
chr1 (201-355)||(51991529-51991683)
chr1 (208-355)||(45650005-45650152)
chr1 (202-330)||(24594117-24594245)
chr1 (201-308)||(43916600-43916707)
chr1 (201-353)||(24451738-24451890)
chr1 (201-277)||(1845326-1845402)
chr1 (201-290)||(51005045-51005134)
chr1 (209-353)||(26424102-26424247)
chr1 (214-357)||(33985907-33986049)
chr1 (209-353)||(12227121-12227266)
chr1 (209-354)||(12222475-12222620)
chr1 (209-354)||(46918384-46918529)
chr1 (239-358)||(7426953-7427072)
chr1 (220-353)||(30547039-30547171)
chr1 (227-354)||(34256452-34256578)
chr1 (272-353)||(44978869-44978950)
chr1 (209-353)||(49982717-49982862)
chr1 (220-332)||(45318096-45318208)
chr1 (227-307)||(51161169-51161249)
chr1 (239-353)||(10061157-10061271)
chr1 (209-355)||(14077327-14077473)
chr1 (201-355)||(25493496-25493650)
chr1 (239-353)||(43224938-43225052)
chr1 (320-353)||(633021-633054)
chr1 (304-361)||(45317928-45317985)
chr1 (320-353)||(48616820-48616853)
chr1 (209-269)||(44978973-44979033)
chr1 (201-351)||(17376357-17376507)
chr1 (227-354)||(46368513-46368639)
chr1 (320-354)||(4155789-4155823)
chr1 (4-38)||(7435829-7435863)
chr1 (331-361)||(14153067-14153097)
chr1 (201-354)||(14190889-14191042)
chr1 (229-283)||(23540233-23540287)
chr1 (214-356)||(28791637-28791777)
chr1 (209-283)||(48868326-48868400)
chr1 (209-282)||(33234317-33234390)
chr1 (201-282)||(48480921-48481002)
chr1 (320-353)||(51369329-51369362)
chr1 (262-353)||(31075925-31076017)
chr1 (272-332)||(47601668-47601728)
[»] scaffold1844 (1 HSPs)
scaffold1844 (201-354)||(1115-1267)
[»] scaffold0009 (1 HSPs)
scaffold0009 (201-352)||(214141-214291)
[»] scaffold0721 (1 HSPs)
scaffold0721 (201-356)||(6840-6997)
[»] scaffold0045 (1 HSPs)
scaffold0045 (208-362)||(37964-38126)
[»] scaffold0072 (1 HSPs)
scaffold0072 (229-354)||(47858-47982)
[»] scaffold0841 (1 HSPs)
scaffold0841 (214-287)||(3322-3395)
[»] scaffold0005 (1 HSPs)
scaffold0005 (320-359)||(36982-37021)
[»] scaffold0022 (1 HSPs)
scaffold0022 (201-354)||(166672-166825)
[»] scaffold0001 (1 HSPs)
scaffold0001 (320-354)||(404684-404718)
[»] scaffold0604 (1 HSPs)
scaffold0604 (320-351)||(2022-2053)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 202 - 356
Target Start/End: Complemental strand, 4491025 - 4490871
Alignment:
Q  202 gtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  4491025 gtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgttttaatatgaatttga 4490926  T
Q  302 tgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  4490925 tgatttggtgtactggtacactcaaatttttgagtgtactatagaatttgcctaa 4490871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 40438889 - 40439041
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  40438889 cgtcgacactttcggtaactaagatctaattattgtaattattaatgatagaaaacgattctttttcttcaaaaaaacaactcgtttcaatatgaattta 40438988  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  40438989 atgatttggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcc 40439041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 44957180 - 44957323
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44957180 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 44957279  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    |||| || | | ||||||||||||||||||||||||||||||||    
T  44957280 ggtgtaccgatacactcaaatttttgagtgtaccatagaatttg 44957323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 39103800 - 39103946
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39103800 acttttggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatataaatttgatgattt 39103899  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
     ||| || ||| |||||||||||||||||||||||||||||||||||    
T  39103900 agtgtaccggtacactcaaatttttgagtgtaccatagaatttgcct 39103946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 53973718 - 53973864
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53973718 acttttggtaactaagatctaattattgtaatttttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatataaatttgatgattt 53973817  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
     ||| || ||| |||||||||||||||||||||||||||||||||||    
T  53973818 agtgtaccggtacactcaaatttttgagtgtaccatagaatttgcct 53973864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 202 - 354
Target Start/End: Complemental strand, 12756154 - 12756001
Alignment:
Q  202 gtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacga-ttctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  12756154 gtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaaaaaattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 12756055  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||||| || | | |||||||||||||||||||||||||||||||||||    
T  12756054 atgatttggtgtaccgatacactcaaatttttgagtgtaccatagaatttgcct 12756001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 210 - 354
Target Start/End: Original strand, 31296782 - 31296926
Alignment:
Q  210 tttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttgg 309  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31296782 tttcggcaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttag 31296881  T
Q  310 tgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    || || ||| ||||||||||||| |||||||||||||||||||||    
T  31296882 tgtaccggtacactcaaattttttagtgtaccatagaatttgcct 31296926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 201 - 350
Target Start/End: Complemental strand, 52405685 - 52405536
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  52405685 cgtcgacactttctgtaactaagatctaattattgtaattggtaatgatagaaaaaaattctttttcttcgaaaaaacaactcgttttaatatgaatttg 52405586  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    ||||||||||| || ||| |||||||||||||||||||||| ||||||||    
T  52405585 atgatttggtgtaccggtacactcaaatttttgagtgtaccctagaattt 52405536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 19526876 - 19526724
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  19526876 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcattttaatatgaatttg 19526777  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || |||| ||| || | | |||| |||||||||||||||||||||||||||||    
T  19526776 ataatttagtgtacggatacacttaaatttttgagtgtaccatagaatttgcc 19526724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 201 - 363
Target Start/End: Complemental strand, 19595083 - 19594921
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||     
T  19595083 cgtcgacactatcggtaactaagatctaattattgtaattgttaatgatagaaaacaattatttttcttcgaaaaaacaattcgtttcaatatgaattta 19594984  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaatttttaa 363  Q
    ||||||| ||| ||  || ||||||||||||| ||||||||||||||||| |||| |||||||    
T  19594983 atgattttgtgtacaagtacactcaaatttttaagtgtaccatagaatttacctattttttaa 19594921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 49286873 - 49287017
Alignment:
Q  210 tttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |    
T  49286873 tttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcg-aaaaacaactcgttttaatatgaatttgatgattttg 49286971  T
Q  310 tgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    || || ||| |||||||||| |||||||||||||| ||||||||||    
T  49286972 tgtaccggtacactcaaattattgagtgtaccataaaatttgccta 49287017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 31975701 - 31975547
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |   |||||||||||||||| ||||||||||||    
T  31975701 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattttttttttaaaaaaaaacaactcgttttaatatgaatttg 31975602  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||||||||||| || ||| || |||||||||| ||||||||||||||||||||||    
T  31975601 atgatttggtgtaccggtacattcaaatttttaagtgtaccatagaatttgccta 31975547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 39953838 - 39953970
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || | |||||||||||||||||    
T  39953838 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgattgaaaacaattctttttcttcgaaaaaataatttgtttcaatatgaatttg 39953937  T
Q  301 atgatttggtgcactggtgcactcaaatttttg 333  Q
    ||||||||||| || ||| || |||||||||||    
T  39953938 atgatttggtgtaccggtacattcaaatttttg 39953970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 201 - 356
Target Start/End: Complemental strand, 15060709 - 15060554
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||||||||| | ||| ||||||||| ||||||||||||||||||||||||| | ||  ||||||||| |||||||||||||||||||||| || ||     
T  15060709 cgtcgatacttttgttaaataagatctagttattgtaattgttaatgatagaaatcaataatttttcttcaaaaaaacaactcgtttcaatattaaatta 15060610  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    ||||||||||| || |||||||||||||| |||| |||||||||||||||||||||    
T  15060609 atgatttggtgtaccggtgcactcaaattcttgaatgtaccatagaatttgcctaa 15060554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 34927364 - 34927463
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34927364 actttcggtaactaagatctaattattgtaatttttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 34927463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 220 - 359
Target Start/End: Original strand, 595545 - 595684
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |   |||||||| ||||| || |||| |||||| |||     
T  595545 taagatctaattattgtaattattaatgatagaaaacaattctttttcttcgaaaaaacaattgccttcaatattaatttaataatttagtgcaccggta 595644  T
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaattt 359  Q
    |||||||| ||||||||||| |||||||||||||| ||||    
T  595645 cactcaaacttttgagtgtatcatagaatttgccttattt 595684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 34584451 - 34584546
Alignment:
Q  215 gtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggt 310  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  34584451 gtaaataagatctaattattgtaattgttagtgatagaaaacaattatttttctttaaaaaaacaactcgtttcaatattaatttgatgatttggt 34584546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 52940625 - 52940480
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaa-caactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||| ||| ||||||||| |||||| |||||||||| | ||| ||||| || ||||    
T  52940625 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacaattatttttcttcaaaaaaaacaactcgtttaattattaatttaataattt 52940526  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||| ||| |||||||||| |||  ||||||||||||||||||    
T  52940525 ggtgcaccggtacactcaaattgttggatgtaccatagaatttgcc 52940480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 340
Target Start/End: Complemental strand, 4695439 - 4695320
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    |||||||||  |||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||| || || ||||||||||| || ||||    
T  4695439 taagatctagctattgtaattgttaatgatataaaacaattatttttcttc-aaaaaacaactcgtttcaatattaaattaatgatttggtgtaccggtg 4695341  T
Q  320 cactcaaatttttgagtgtac 340  Q
    ||||||| || ||||||||||    
T  4695340 cactcaagttcttgagtgtac 4695320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 52324228 - 52324374
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||   |||||||| |||| |||||||||||  ||| ||||| ||||| ||| |||    
T  52324228 cttttggtaaataagatttaattattataattgtcaatgatagaaaatatttcttttttcttcaaaaaaacaactaatttaaatattaatttaatgcttt 52324327  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||| || ||| |||||||| | ||| |||||||||| |||||||||    
T  52324328 ggtgtaccggtacactcaaaatgttgggtgtaccataaaatttgcct 52324374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 352
Target Start/End: Complemental strand, 16601736 - 16601611
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaa 326  Q
    |||||||| ||||||| ||||||| ||||  ||||||||||||| |||| ||||||| ||| | ||| ||||| | ||||||||| || ||| |||||||    
T  16601736 taattattataattgtcaatgataaaaaataattctttttcttcaaaaatacaactcatttaattattaatttaacgatttggtgtaccggtacactcaa 16601637  T
Q  327 atttttgagtgtaccatagaatttgc 352  Q
    |||||| | |||||| ||||||||||    
T  16601636 attttttattgtaccgtagaatttgc 16601611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 356
Target Start/End: Original strand, 30168361 - 30168509
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattc-tttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  |||| ||||||||| |||||||||||  ||| | ||| ||||| ||| |||    
T  30168361 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattcttttttcttcaaaaaaacaactaatttaattattaatttaatgcttt 30168460  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
     ||| || | | |||||||| | ||||||||||| || |||||||||||    
T  30168461 agtgtaccgatacactcaaaatgttgagtgtaccttaaaatttgcctaa 30168509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 39380662 - 39380805
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| |||||| | |||||| | |||||  |||||||||||  ||||||||||||  |||||| ||||| ||| | | | ||||| ||||||||    
T  39380662 cttttggtaaataagatttgattattatgattgtcgatgatagaaaataattctttttcttaaaaaaaa-aactcatttaattgttaatttaatgatttg 39380760  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||| || ||| |||| |||||||||| ||||||||||||||||||    
T  39380761 gtgtaccggtacacttaaatttttgaatgtaccatagaatttgcc 39380805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 18052199 - 18052353
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaaca--actcgtttcaatatgaatttgatgatt 306  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||| |  |||||||||||  |||||| |  |||||||| | ||| ||||| || |||    
T  18052199 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaccagttctttttcttaaaaaaaaaataactcgtttaattattaatttaataatt 18052298  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaattttt 361  Q
    || || ||   | |||||||||| || ||||||| ||||||||||||||||||||    
T  18052299 tgatgtacccctacactcaaattgttaagtgtactatagaatttgcctaattttt 18052353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 351
Target Start/End: Complemental strand, 32570517 - 32570370
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat 302  Q
    ||||| |||| ||||| || ||| ||| |||| ||||| | |||||||||||| |||| ||||||||| |||||| ||||  ||| | ||| ||||| |     
T  32570517 tcgatgcttttggtaaataggatttaagtattataattttcaatgatagaaaatgattttttttcttc-aaaaaataactaatttaattattaatttaaa 32570419  T
Q  303 gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    | |||||||||| ||| |||||||| |||||  ||||||||||||||||    
T  32570418 ggtttggtgcaccggtacactcaaaattttggatgtaccatagaatttg 32570370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 15033561 - 15033483
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaattt 299  Q
    ||||||||||||||||||||| ||||||||||||||  ||| ||||||||   ||||||||||| ||||||||| |||||    
T  15033561 taagatctaattattgtaattattaatgatagaaaataattttttttctt-ataaaaacaactcttttcaatattaattt 15033483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 32737546 - 32737597
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  32737546 atttggtgcaccggtacactcaaattattgagtgtaccatagaatttgccta 32737597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 337396 - 337542
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaa-ctcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| | |||||| ||||||| ||||||||||||  ||||||||||||| |||||| || ||| ||| |   | ||||| | |||||    
T  337396 cttttggtaaataagatttgattattataattgtgaatgatagaaaataattctttttcttcaaaaaaaaaaactcatttaatggtcaatttaacgattt 337495  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||| || ||  |||||||| |||||  |||||||||||||||||||    
T  337496 ggtgtaccggcacactcaaaattttggatgtaccatagaatttgcct 337542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 9579928 - 9580048
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaac-gattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||| |||| ||||||||  |||||||||||||||| | ||| ||||| || ||||    
T  9579928 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacagatt-tttttcttaaaaaaaacaactcgtttaattattaatttaataattt 9580026  T
Q  308 ggtgcactggtgcactcaaatt 329  Q
    | || || ||| | ||||||||    
T  9580027 gatgtaccggtaccctcaaatt 9580048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 9585623 - 9585743
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaac-gattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||| |||| ||||||||  |||||||||||||||| | ||| ||||| || ||||    
T  9585623 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacagatt-tttttcttaaaaaaaacaactcgtttaattattaatttaataattt 9585721  T
Q  308 ggtgcactggtgcactcaaatt 329  Q
    | || || ||| | ||||||||    
T  9585722 gatgtaccggtaccctcaaatt 9585743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 13548677 - 13548810
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    |||||| |||||||| |||||||  |||||||||||  ||| ||||| |   |||| ||||||| ||| | ||| ||||| ||||||||||| || |||     
T  13548677 taagatttaattattataattgtcgatgatagaaaataattttttttttcacaaaacacaactcatttaattattaatttaatgatttggtgtaccggta 13548776  T
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||||||  || |||||| ||||||||    
T  13548777 cactcaaatttttggatgcaccataaaatttgcc 13548810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 360
Target Start/End: Complemental strand, 19842586 - 19842431
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaa---ctcgtttcaatatgaatttgatga 304  Q
    ||||| ||||| ||| || ||||||||  || ||| ||||||| ||||  ||||||||||||  |||||| ||   ||| ||| | ||| ||||| |  |    
T  19842586 acttttggtaaataaaatttaattattaaaactgtcaatgataaaaaaaaattctttttcttaaaaaaaaaaaaaactcatttaattattaatttaacaa 19842487  T
Q  305 tttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaatttt 360  Q
    ||||||| |||||| ||||||||||||||  ||||||||||||||||||| |||||    
T  19842486 tttggtgtactggtacactcaaatttttggatgtaccatagaatttgccttatttt 19842431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 350
Target Start/End: Original strand, 38961246 - 38961367
Alignment:
Q  229 attattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaat 328  Q
    |||||| ||||||| ||||||||||||  ||||||||||||| |||||| ||||| ||| |   | ||||| | ||||||||| || | | || |||||     
T  38961246 attattataattgtaaatgatagaaaaaaattctttttcttcaaaaaaaaaactcatttaatgtttaatttaacgatttggtgtaccgatacaatcaaaa 38961345  T
Q  329 ttttgagtgtaccatagaattt 350  Q
    ||||| ||||||||||||||||    
T  38961346 ttttgggtgtaccatagaattt 38961367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 350
Target Start/End: Original strand, 39412426 - 39412576
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtt---tcaatatgaattt 299  Q
    ||||| |||| ||||| |||||| |||||||| || |||| ||||||||||||  ||| ||||||||| |||||||||||  ||   | | ||| |||||    
T  39412426 tcgatgcttttggtaaataagatttaattattatagttgtcaatgatagaaaataattttttttcttcaaaaaaacaactaatttaattagtattaattt 39412525  T
Q  300 gatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
     ||| ||||||| |||||| |||||||| | |||  | |||||||||||||    
T  39412526 aatgctttggtgtactggtacactcaaaatgttggatataccatagaattt 39412576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 353
Target Start/End: Original strand, 1792096 - 1792233
Alignment:
Q  215 gtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    |||| |||||| |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||||||    ||| | ||| ||||| ||| ||||||| |    
T  1792096 gtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattattaatttaatg-tttggtgta 1792193  T
Q  314 ctggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    | ||| |||||||| | |||||||||||||||||||||||    
T  1792194 ccggtacactcaaaatattgagtgtaccatagaatttgcc 1792233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 14802745 - 14802706
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaattt 359  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14802745 cactcaaattgttgagtgtaccatagaatttgcctaattt 14802706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 46688151 - 46688093
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaatttttaa 363  Q
    |||||||| || ||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  46688151 atttggtgtaccggtacactcaaatttttgagtgtaccattgaatttgcc-aatttttaa 46688093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 25607683 - 25607573
Alignment:
Q  244 aatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccat 343  Q
    |||||||||||| |||| ||||||||| |||||  ||||  ||| | ||| ||||| | | |||||||||| ||| |||||||| |||||  |||| |||    
T  25607683 aatgatagaaaatgattttttttcttcaaaaaacaaactaatttaattattaatttaaaggtttggtgcaccggtacactcaaaattttggatgtatcat 25607584  T
Q  344 agaatttgcct 354  Q
    |||||||||||    
T  25607583 agaatttgcct 25607573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 351
Target Start/End: Complemental strand, 27635878 - 27635741
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    ||||| ||| || |||||||| || |||| ||||||||||||  ||| ||||||||| ||||||||| || ||| | ||| ||||| | || |||||| |    
T  27635878 ggtaaataaaatttaattattatagttgtcaatgatagaaaataattatttttcttcaaaaaaacaattcattt-attattaatttaacgacttggtgta 27635780  T
Q  314 ctggtgcactcaaattt-ttgagtgtaccatagaatttg 351  Q
    ||| | ||| ||||||| ||||||||||| |||||||||    
T  27635779 ctgatacacccaaatttattgagtgtaccgtagaatttg 27635741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 27950510 - 27950592
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||||| ||||| ||||| |||||| |||||||| ||||| ||||||||| ||||  ||||||||||||  ||| ||||||||    
T  27950510 cgtcgaaacttttggtaaataagatttaattattataattattaatgataaaaaataattctttttcttaaaaacaacaactc 27950592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 21515103 - 21514988
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||| ||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | ||||||||| || | | ||| ||||||| ||| |||    
T  21515103 ttgtcaatgataaaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgatttggtgtaccgatacacccaaatttattgggtg 21515005  T
Q  338 taccatagaatttgcct 354  Q
    |||||||||||||||||    
T  21515004 taccatagaatttgcct 21514988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 19627732 - 19627697
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaa 255  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19627732 taagatctaattattataattgttaatgatagaaaa 19627697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 6807255 - 6807401
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgat-tctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| |||||||  |||||  ||||  || | ||||| ||| |||||||||||  ||| | ||| ||||| ||| |||    
T  6807255 cttttggtaaataagatttaattattataattgtcgatgatgaaaaataatatttttttattcaaaaaaacaactaatttaattattaatttaatgtttt 6807354  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||| |||| | || ||||| | ||| ||||||||||||||||||||    
T  6807355 ggtgtactgatacattcaaaatgttgggtgtaccatagaatttgcct 6807401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 23639503 - 23639639
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||||| |    
T  23639503 ggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttggtgta 23639601  T
Q  314 ctggtgcactcaaattt-ttgagtgtaccatagaattt 350  Q
    | | | ||||||||||| |||  |||||||||||||||    
T  23639602 ccgatacactcaaatttattggatgtaccatagaattt 23639639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 36569762 - 36569646
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||||| || | | ||| ||||||| ||| |||    
T  36569762 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttggtgtaccgatacacccaaatttattgggtg 36569664  T
Q  338 taccatagaatttgccta 355  Q
    ||||||| ||||||||||    
T  36569663 taccatataatttgccta 36569646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 20142945 - 20142997
Alignment:
Q  303 gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    |||||||||||| |||  |||||||||||| ||||||||||  ||||||||||    
T  20142945 gatttggtgcaccggtatactcaaattttttagtgtaccatgaaatttgccta 20142997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 44998562 - 44998404
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||  |||||||||||| ||| | ||| |||||     
T  44998562 cgtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttctta-aaaaaacaactcattt-attattaatttt 44998465  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcctaatttt 360  Q
    |||| |||||| ||   | ||| ||||||| ||| |||||||||||||||||||| |||||    
T  44998464 atgacttggtgtaccaatacacccaaatttattgggtgtaccatagaatttgccttatttt 44998404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 48262711 - 48262565
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| |||| ||||| || ||| ||| |||| ||||| | |||||||||||| |||| ||||| |||| |||||| ||||  ||| | ||| ||||| |    
T  48262711 tcgatgcttttggtaaataggatttaagtattataattttcaatgatagaaaatgatttttttttcttc-aaaaaataactaatttaattattaatttaa 48262613  T
Q  302 tgatttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    || ||||||| || | | |||||||| |||| |||||||||||||||||    
T  48262612 tg-tttggtgtaccgatacactcaaaattttaagtgtaccatagaattt 48262565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 201 - 354
Target Start/End: Original strand, 5204873 - 5205026
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5204873 cgtcgacactttcggtaactaagatctaattattgtaattgttattgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 5204972  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  5204973 atgatttggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcct 5205026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 201 - 354
Target Start/End: Original strand, 40756797 - 40756950
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40756797 cgtcgacactttcggtaactaagatctaattattgtaattgttattgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 40756896  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  40756897 atgatttggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcct 40756950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 4429571 - 4429418
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4429571 cgtcgacactttcggtaactaagatctaattattgaaatcgttaataatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 4429472  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||||  || ||| |||||||||||||||||||||||||||||||||||    
T  4429471 atgatttggtataccggtacactcaaatttttgagtgtaccatagaatttgcct 4429418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 202 - 353
Target Start/End: Original strand, 5140924 - 5141075
Alignment:
Q  202 gtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||    
T  5140924 gtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttatttgaaaaaacaactcgtttcaatatgaatttga 5141023  T
Q  302 tgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||||| || ||| ||||||||||||||||||| ||||| ||||||||    
T  5141024 tgatttggtgtaccggtacactcaaatttttgagtgtgccatataatttgcc 5141075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 201 - 354
Target Start/End: Original strand, 39939320 - 39939473
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||    
T  39939320 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcaaaagaacaactcgtttcaatataaatttg 39939419  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    || |||||||| || ||| ||||||||||||||| || |||||| |||||||||    
T  39939420 ataatttggtgtaccggtacactcaaatttttgaatgcaccataaaatttgcct 39939473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 23690755 - 23690907
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||| ||||||||||||    
T  23690755 cgtcgacactttcagtaactaagatctaattattgtaattgttaatgatagaaaaaaaatctttttcttcgataaaacaactcgttttaatatgaatttg 23690854  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || |||||||| || ||| ||||||||||||| ||||||||||||||||||||    
T  23690855 ataatttggtgtaccggtacactcaaattttttagtgtaccatagaatttgcc 23690907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 27876210 - 27876301
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtg 311  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27876210 taagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaataactcgtttcaatatgaatttgatgatttggtg 27876301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 201 - 327
Target Start/End: Original strand, 13544345 - 13544471
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| | ||| |||||||||  |||||||||||||||||||||||||   || ||||||||| |||||||||||||||||||||| || ||     
T  13544345 cgtcgacacttttgttaaataagatctagctattgtaattgttaatgatagaaaaaatttatttttcttcaaaaaaacaactcgtttcaatatcaaatta 13544444  T
Q  301 atgatttggtgcactggtgcactcaaa 327  Q
    | ||||||||| || ||||||||||||    
T  13544445 acgatttggtgtaccggtgcactcaaa 13544471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 209 - 350
Target Start/End: Complemental strand, 23408396 - 23408255
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaac-gattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| || ||| |||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||||   ||| ||||| || ||||    
T  23408396 cttttggtaaatacgatttaattattgtaattgtcaataatagaaaacagatt-tttttcttcaaaaaaacaactcgtttacttattaatttaataattt 23408298  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    |||| || ||| |||||||||| ||| |||||||||| |||||    
T  23408297 ggtgtaccggtacactcaaattgttgggtgtaccatataattt 23408255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 353
Target Start/End: Original strand, 4039753 - 4039878
Alignment:
Q  228 aattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaa 327  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||  |||||| ||||  ||| | ||  ||||| ||||||||||| || ||| ||||||||    
T  4039753 aattattataattgtcaatgatagaaaataattctttttcttaaaaaaaaaaacttattttattaataatttaatgatttggtgtaccggtacactcaaa 4039852  T
Q  328 tttttgagtgtaccatagaatttgcc 353  Q
    ||||| | ||||| ||||||||||||    
T  4039853 tttttaaatgtactatagaatttgcc 4039878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 352
Target Start/End: Complemental strand, 19189231 - 19189107
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaa 326  Q
    ||||||||||||| || |||||||||||    |||||||||||  ||||||||| |||||| | ||| ||||| || |||| ||| || ||| |||||||    
T  19189231 taattattgtaat-gtcaatgatagaaactagttctttttctttaaaaaaacaattcgtttaattattaatttaataatttagtgtaccggtacactcaa 19189133  T
Q  327 atttttgagtgtaccatagaatttgc 352  Q
    ||| ||| ||||||||||||||||||    
T  19189132 attgttgggtgtaccatagaatttgc 19189107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 362
Target Start/End: Complemental strand, 19238937 - 19238785
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| |||| || ||||||||||||  ||| ||||| |||| |||||||||    ||| | ||||||||| ||| |||    
T  19238937 cttttggtaaataagatttaattattataatagtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattatgaatttaatg-ttt 19238840  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaattttta 362  Q
    |||| || ||| |||||||| | ||| ||||||||||||||||||||| ||||||    
T  19238839 ggtgtaccggtacactcaaaatgttgggtgtaccatagaatttgcctatttttta 19238785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 25684187 - 25684070
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | ||||||||| || | | ||| ||||||| ||| |||    
T  25684187 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgatttggtgtaccgatacacccaaatttattgggtg 25684089  T
Q  338 taccatagaatttgcctaa 356  Q
    |||||||||||||||||||    
T  25684088 taccatagaatttgcctaa 25684070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 16602625 - 16602769
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgatt-ctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  |||  ||||||||| |||||||||    ||| | ||| ||||| ||| |||    
T  16602625 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttcaaaaaaacaatcaatttaattattaatttaatg-ttt 16602723  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||| || ||| |||||||| | ||| |||||||||||||||||||    
T  16602724 ggtgtaccggtacactcaaaatgttgggtgtaccatagaatttgcc 16602769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 354
Target Start/End: Original strand, 2011332 - 2011465
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggt 318  Q
    |||||| |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||||||    ||| | ||| ||||| ||| ||||||| || |||    
T  2011332 taagatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattattaatttaatg-tttggtgtaccggt 2011429  T
Q  319 gcactcaaatttttgagtgtaccatagaatttgcct 354  Q
     |||||||| | ||||||||||||||||||||||||    
T  2011430 acactcaaaatgttgagtgtaccatagaatttgcct 2011465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 356
Target Start/End: Original strand, 28770209 - 28770354
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||    
T  28770209 cttttggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttc-aaaaaacaactcattt-attattaattttacgacttg 28770306  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    ||| |||| | ||| ||||||| |  ||||||||||||||||||||||    
T  28770307 gtgtactgatacacccaaatttattggtgtaccatagaatttgcctaa 28770354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 359
Target Start/End: Original strand, 39540974 - 39541132
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| |||||     
T  39540974 cgtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttt 39541072  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcctaattt 359  Q
    ||||||||||| |  | | ||  ||||||| ||| |||||| ||||||||||||||||||    
T  39541073 atgatttggtgtatcgatacatccaaatttattgggtgtacaatagaatttgcctaattt 39541132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 2148394 - 2148534
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| |||| |||||| |    
T  2148394 ggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttatgacttggtgta 2148492  T
Q  314 ctggtgcactcaaattt-ttgagtgtaccatagaatttgcct 354  Q
    | | | ||| ||||||| ||| |||||||| |||||||||||    
T  2148493 ccgatacacccaaatttattgggtgtaccaaagaatttgcct 2148534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 16432911 - 16433058
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaa--aacaactcgtttcaatatgaatttgatgatt 306  Q
    |||| ||||| |||||| ||||| || ||||||| || |||||||||   |||||||||||  ||||  |||||||| ||| | ||| || || | ||||    
T  16432911 cttttggtaaataagatttaatttttataattgtcaacgatagaaaatacttctttttcttaaaaaaaaaacaactcatttaattattaaattaaggatt 16433010  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||| |||||| |||||||||  |||  ||||||||| |||||||||    
T  16433011 tggtgtactggtacactcaaataattggatgtaccataaaatttgcct 16433058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 354
Target Start/End: Complemental strand, 7080210 - 7080120
Alignment:
Q  264 tttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||| |||||||||||| ||| | ||  ||||| |  |||||||| |  ||| ||||||||| ||||| |||||||||||||||||||    
T  7080210 tttcttcaaaaaaacaactcatttaattaataatttaacaatttggtgtatcggtacactcaaatatttgaatgtaccatagaatttgcct 7080120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 350
Target Start/End: Original strand, 23259020 - 23259149
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    |||||| ||||| || ||||| | ||||||||||||  |||||||| |||| |||||||||||| ||| ||||| ||||| || ||||| || || | |     
T  23259020 taagatttaatttttataattttcaatgatagaaaataattctttt-cttcaaaaaaacaactcatttaaatattaatttaattatttgatgtacagata 23259118  T
Q  320 cactcaaatttttgagtgtaccatagaattt 350  Q
    |||||||||  ||  |||||||||| |||||    
T  23259119 cactcaaatacttaggtgtaccataaaattt 23259149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 43393113 - 43393159
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    |||||||| || ||| ||||||||||||||||||||||||| |||||    
T  43393113 atttggtgtaccggtacactcaaatttttgagtgtaccatataattt 43393159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 777407 - 777483
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgat--agaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||| ||||| |||||| |||||||| ||||||||||||||  | ||||| ||||||||||||  ||| ||||||||    
T  777407 cttttggtaaataagatttaattattataattgttaatgataaaaaaaacaattctttttcttgaaaacaacaactc 777483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 2021769 - 2021680
Alignment:
Q  265 ttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||| |||||||||||| ||| | ||  ||||| |  |||||||| |  ||| ||||||||| |||| ||||||||||||||||||||    
T  2021769 ttcttcaaaaaaacaactcatttgattaataatttaacaatttggtgtatcggtacactcaaatatttgggtgtaccatagaatttgcct 2021680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 5513047 - 5513080
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||| ||||||||||||||||||||||||    
T  5513047 cactcaaatatttgagtgtaccatagaatttgcc 5513080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 12362731 - 12362764
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||| |||||||||||||||||||||||||||||    
T  12362731 cacttaaatttttgagtgtaccatagaatttgcc 12362764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 28204911 - 28204842
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    ||||| |||||| |||||||| ||||||||||||||| ||||  ||| ||||||||  ||| ||||||||    
T  28204911 ggtaaataagatttaattattataattgttaatgataaaaaataattatttttcttaaaaacaacaactc 28204842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 4366871 - 4366787
Alignment:
Q  272 aaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |||||||||||  ||| | ||| ||||| | ||||||||| || ||||||||||||| | |  |||||||||||||||| |||||    
T  4366871 aaaaaacaacttatttaattattaatttaacgatttggtgtaccggtgcactcaaatgtataggtgtaccatagaattttcctaa 4366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 201 - 356
Target Start/End: Complemental strand, 1705758 - 1705603
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  1705758 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattttttttcttcgaaaaaacaactcgtttcaatatgaatttg 1705659  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    ||||||||||| || | | |||||||||||||||||||||||||||||||||||||    
T  1705658 atgatttggtgtaccgatacactcaaatttttgagtgtaccatagaatttgcctaa 1705603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 208 - 353
Target Start/End: Complemental strand, 24248949 - 24248804
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  24248949 acttttggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcaaaaaaacaactcgtttcaatataaatttgatgattt 24248850  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||| || ||| ||||||||||||||||||||||||||||||||||    
T  24248849 ggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcc 24248804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 19473823 - 19473669
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  19473823 cgtcgacactttcggtaactaagatctaattattgtaattggtaatgatagaaaaaaattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 19473724  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||||||||||| || ||| |||||||||||||||||||||| |||||||| ||||    
T  19473723 atgatttggtgtaccggtacactcaaatttttgagtgtaccctagaatttaccta 19473669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 1371555 - 1371411
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaa-aaaacaactcgtttcaatatgaatttgatgatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  1371555 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaaacaactcgtttcaataggaatttgatgatt 1371456  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||    
T  1371455 tggtgcactgggacactcaaatttttgagtgtgccatagaatttg 1371411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 1379303 - 1379159
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaa-aaaacaactcgtttcaatatgaatttgatgatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  1379303 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaaacaactcgtttcaataggaatttgatgatt 1379204  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||    
T  1379203 tggtgcactgggacactcaaatttttgagtgtgccatagaatttg 1379159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 210 - 353
Target Start/End: Complemental strand, 10965862 - 10965719
Alignment:
Q  210 tttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10965862 tttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattttttttcttcgaaaaaacaactcgttacaatatgaatttgatgatttgg 10965763  T
Q  310 tgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || |  ||| ||||||||||||| ||||||||||||||||||||    
T  10965762 tgtatcggtacactcaaatttttaagtgtaccatagaatttgcc 10965719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 2994586 - 2994729
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2994586 actttcggtaactaagatctaattattgtaattgttaatgatggaaaacaattctttttctttgaaaaaacaactcgtttcaatatgaatttgatgattt 2994685  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    |||| || | | |||||||| ||| |||||||||||||||||||    
T  2994686 ggtgtaccgatacactcaaaatttggagtgtaccatagaatttg 2994729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 217 - 354
Target Start/End: Complemental strand, 21181275 - 21181138
Alignment:
Q  217 aactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactg 316  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| || |    
T  21181275 aactaagatctaattattgtaattgtcaatgatagaaaacaattatttttcttcgaaaaaacaacttgtttcaatataaatttgatgatttggtgtaccg 21181176  T
Q  317 gtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
     | |||||||||||||||||||||||||||||||||||    
T  21181175 atacactcaaatttttgagtgtaccatagaatttgcct 21181138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 201 - 362
Target Start/End: Complemental strand, 1339526 - 1339365
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| | ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||    
T  1339526 cgtcgacacttttgataaataagatctaattattataattgttaatgatagaaaacaattctttttcttcaaaagaacaactcgtttcaatattaatttg 1339427  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaattttta 362  Q
    ||||||||||| |  ||| ||||||||||||| |||||||||||||||||||| ||| ||||    
T  1339426 atgatttggtgtatcggtacactcaaatttttaagtgtaccatagaatttgccaaatattta 1339365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 201 - 357
Target Start/End: Complemental strand, 21293942 - 21293786
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| || ||||||| ||||||    
T  21293942 cgtcgacactttcggtaactaagatctaattattgtaattattaatgatagaaaacaattctttttcttcaaaaaaacaacttgtatcaatataaatttg 21293843  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaat 357  Q
    ||||||| ||  || ||| ||||||||||||||| | |||||||||||||| |||||    
T  21293842 atgatttagtataccggtacactcaaatttttgaatataccatagaatttgtctaat 21293786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 252 - 351
Target Start/End: Complemental strand, 14507017 - 14506918
Alignment:
Q  252 aaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||    
T  14507017 aaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgtaccggtacactcaaatttttcagtgtaccatagaatttg 14506918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 201 - 351
Target Start/End: Original strand, 24159717 - 24159876
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaa---------aacaactcgtttcaat 291  Q
    |||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||         ||||||||||||||||    
T  24159717 cgtcgacacttttgataaataagatctaattattgtaattgttaatgatagaaaacaattatttttcttcaaaaaaaaaaaaaaaacaactcgtttcaat 24159816  T
Q  292 atgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    || ||| ||||||||||||| ||  || ||||||||||||| ||||||||||||||||||    
T  24159817 attaatgtgatgatttggtgtaccagtacactcaaattttttagtgtaccatagaatttg 24159876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 203 - 353
Target Start/End: Original strand, 10888066 - 10888216
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat 302  Q
    ||||| |||| ||||| || ||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||  | ||| ||||| ||    
T  10888066 tcgatgcttttggtaaatacgatttaattattgtaattgtaaatgatagaaaacaattctttttcttctaaaaaacaactcgttcaattattaatttaat 10888165  T
Q  303 gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
     ||||| || ||  || |||||||||| |||  ||||||||| ||||||||    
T  10888166 aatttgatgtaccagtacactcaaattgttggatgtaccatataatttgcc 10888216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 14507772 - 14507717
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaac 256  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14507772 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaac 14507717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 7344606 - 7344722
Alignment:
Q  238 attgttaatgatagaaaacgattctttttcttcgaaaa-aacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagt 336  Q
    ||||| ||||||||||||| ||| ||||||||| |||| |||||||||||| | |||  |||| || |||||||| || ||| |||||||||| ||| ||    
T  7344606 attgtcaatgatagaaaacaattatttttcttcaaaaaaaacaactcgtttaattatttatttaataatttggtgtaccggtacactcaaattgttgggt 7344705  T
Q  337 gtaccatagaatttgcc 353  Q
    |||||||||||||||||    
T  7344706 gtaccatagaatttgcc 7344722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 26315591 - 26315447
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaa-caactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| || ||| ||||||| |||||||| |||||||||||||  |||||||||||| |||||| |||||||||| |  || ||||| || ||||    
T  26315591 cttttggtaaatacgatttaattat-gtaattgtcaatgatagaaaacagttctttttcttcaaaaaaaacaactcgtttaatcattaatttaataattt 26315493  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||| || ||| |||||||||| |||  ||||||||| ||||||||    
T  26315492 ggtgtaccggtacactcaaattgttggatgtaccataaaatttgcc 26315447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 3954167 - 3954314
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattc-tttttcttc-gaaaaaacaactcgtttcaatatgaatttgatgatt 306  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  |||| |||||||||  |||||||||||  ||| | ||| ||||| ||| ||    
T  3954167 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattcttttttcttcaaaaaaaacaactaatttaattattaatttaatgctt 3954266  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||| |||||| |||||||| | ||   |||||||||||||||||||    
T  3954267 tggtgtactggtacactcaaaatgttagatgtaccatagaatttgcct 3954314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 350
Target Start/End: Original strand, 6974954 - 6975103
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| | ||| ||| || |||||||| ||||| | ||||||||||||  ||| ||| ||||| |||||||||||| ||| | ||| |||||     
T  6974954 cgtcgaaacttttgataaataaaatttaattattataattataaatgatagaaaataattatttatcttcaaaaaaacaactcatttaattattaattta 6975053  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    |  |||||||  || ||  |||||||||||||| ||||||||||||||||    
T  6975054 acaatttggtataccggcacactcaaatttttgggtgtaccatagaattt 6975103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 16893052 - 16892902
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat 302  Q
    ||||| |||| ||||| || ||| ||| |||| ||||| | |||||||||||| |||| ||||||||| |||||||||||  ||| | ||| ||||| |     
T  16893052 tcgatgcttttggtaaataggatttaagtattataattttcaatgatagaaaatgatt-tttttcttc-aaaaaacaactaatttaattattaatttaaa 16892955  T
Q  303 gatttggtgcactggtgcactcaaat-ttttgagtgtaccatagaatttgcct 354  Q
    | |||||||||| ||| ||||||||  ||||| ||||||||||||||||||||    
T  16892954 ggtttggtgcaccggtacactcaaaaattttgggtgtaccatagaatttgcct 16892902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 34196182 - 34196220
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaatt 358  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  34196182 cactcaaatttttgagtgtaccataaaatttgcctaatt 34196220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 32871922 - 32871888
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||| ||||||||||||||||||||||||||    
T  32871922 cactcaaacttttgagtgtaccatagaatttgcct 32871888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 361
Target Start/End: Complemental strand, 26810929 - 26810769
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| |||||     
T  26810929 cgtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttt 26810831  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcctaattttt 361  Q
    | ||||||||| || | | |||  |||||| ||  |||||||||||||||| ||| ||||||    
T  26810830 acgatttggtgtaccgatacacctaaatttattaggtgtaccatagaatttaccttattttt 26810769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 926684 - 926612
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgatt-ctttttcttcgaaaaaacaa 280  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  |||  ||||||||| |||||||||    
T  926684 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttcaaaaaaacaa 926612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 14872583 - 14872635
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaa 255  Q
    |||| ||||| ||||| |||||| |||||||| ||||||| ||||||||||||    
T  14872583 tcgacacttttggtaaataagatttaattattataattgtcaatgatagaaaa 14872635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 32519025 - 32519140
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||||| || | | ||| ||||||| ||| |||    
T  32519025 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttggtgtaccgatacacccaaatttattgggtg 32519123  T
Q  338 taccatagaatttgcct 354  Q
    ||||||| |||||||||    
T  32519124 taccatataatttgcct 32519140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 48460495 - 48460649
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  48460495 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatataaatttg 48460594  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||| ||||    
T  48460595 atgatttggtgtaccggtacactcaaatttttgagtgtaccatagaatttaccta 48460649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 31760145 - 31759992
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||    
T  31760145 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcaaaaaaacaacccgtttcaatatgaatttg 31760046  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||||| || ||| ||||||||||||||||||||||||| |||||||||    
T  31760045 atgatttggtgtaccggtacactcaaatttttgagtgtaccataaaatttgcct 31759992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 17834083 - 17833930
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17834083 cgtcgacactttcagtaactaagatctaattattgtaattgataatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 17833984  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||||||  | ||| |||||||||||||||||||||||||||||||||||    
T  17833983 atgatttggtgtgccggtacactcaaatttttgagtgtaccatagaatttgcct 17833930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 21919952 - 21920098
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcg-aaaaaacaactcgtttcaatatgaatttgatgatt 306  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21919952 acttttggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaaacaactcgtttcaatataaatttgatgatt 21920051  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||||    
T  21920052 tggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcc 21920098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 29689179 - 29689331
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  29689179 cgtcgacactttcggtaactaagatctaattattgtaattattaatgatagaaaacaattatttttcttcaaaaaaacaactcgtttcaatatgaatttg 29689278  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || |||||||| ||  || ||||||||||||||||||||||||||||||||||    
T  29689279 ataatttggtgtaccagtacactcaaatttttgagtgtaccatagaatttgcc 29689331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 23182643 - 23182795
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  23182643 cgtcgacactttcggtaactaagatataattattgtaatagttaatgatagaaaacaattctttttctttgaaaaaacaactcgtttcaatatgaatttg 23182742  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||| || ||  ||||||||||||| |||||| |||||||||||||    
T  23182743 atgatttggtgtaccggaacactcaaattttttagtgtagcatagaatttgcc 23182795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 31743454 - 31743299
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaa--aacaactcgtttcaatatgaatt 298  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||  |||||||||||| ||||| ||||    
T  31743454 cgtcgacacttttggtaaataagatctaattattgtaattgttaatgatagaaaacaattatttttcttcaaaaagaaacaactcgttttaatattaatt 31743355  T
Q  299 tgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31743354 tgatgatttggtgcactggtacactcaaatttttgagtgtaccatagaatttgcct 31743299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 5215173 - 5215062
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaa-aaaacaactcgtttcaatatgaattt 299  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  5215173 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaaacaacccgtttcaatatgaattt 5215074  T
Q  300 gatgatttggtg 311  Q
    ||||||||||||    
T  5215073 gatgatttggtg 5215062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 1343165 - 1343017
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaa--caactcgtttcaatatgaatttgatgatt 306  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||| ||| ||||||||| ||||||  |||||||||| | |||  |||| || |||    
T  1343165 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacaattatttttcttcaaaaaaaaacaactcgtttaattattgatttaataatt 1343066  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||||| || ||| |||||||||| ||| |||||||||||||||||||||    
T  1343065 tggtgtaccggtacactcaaattgttgggtgtaccatagaatttgccta 1343017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 13806506 - 13806361
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||| | | ||||||||| |||||||||||||||| | ||| ||||| || |||||    
T  13806506 cttttggtaaatatgatttaattattgtaattgtcaatgatagaaaacaaatatttttcttcaaaaaaacaactcgtttaattattaatttaataatttg 13806407  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||| |  |||  ||||||||| |||  ||||||||| |||||||||    
T  13806406 gtgtatcggtatactcaaattattggatgtaccatataatttgcct 13806361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 13806213 - 13806349
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    ||||| || ||| ||||||||||||||||||| |||||||||||  ||||||||||| ||||||||| |||||| | |||  |||| || |||||||  |    
T  13806213 ggtaaatacgatttaattattgtaattgttaaggatagaaaacggatctttttcttcaaaaaaacaattcgtttaattatttatttaataatttggtata 13806312  T
Q  314 ctggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    | ||| |||||||||  ||| ||||||||||||||||    
T  13806313 ccggtacactcaaatcgttgggtgtaccatagaattt 13806349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 208 - 344
Target Start/End: Complemental strand, 31311491 - 31311355
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||| ||||| |||||| |||||||| ||||||| ||||||||||||  ||||||||||||| |||||||||||| ||| | ||| ||||| | |||||    
T  31311491 acttttggtaaataagatttaattattataattgtcaatgatagaaaataattctttttcttcaaaaaaacaactcatttaattattaatttaacgattt 31311392  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccata 344  Q
    | || | |||| |||||||| |||| | |||||||||    
T  31311391 gatgtagtggtacactcaaaattttaaatgtaccata 31311355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 32670511 - 32670564
Alignment:
Q  258 attctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtg 311  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32670511 attcattttcttcgaaaaaacaactcgtttcaatatgaatttaatgatttggtg 32670564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 41769526 - 41769621
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatt 298  Q
    |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| || | | ||||||||  |||||||||||||||||||||| ||||    
T  41769526 cgtcgacacttttggtaaataagatctaattatcgtaattgttaatgatagaagac-agtttttttctt-aaaaaaacaactcgtttcaatattaatt 41769621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 354
Target Start/End: Original strand, 27800302 - 27800435
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat-gatttggtgcactggt 318  Q
    |||||| |||||||| ||||||||||||||| ||||  ||||||||||||  ||| |||||||| ||| |  || ||||  || ||||||||| || |||    
T  27800302 taagatttaattattataattgttaatgataaaaaataattctttttcttaaaaacaacaactcatttgatcatcaatt--atcgatttggtgtaccggt 27800399  T
Q  319 gcactcaaatttttgagtgtaccatagaatttgcct 354  Q
     ||||||||||||||  |||||||||||||||||||    
T  27800400 acactcaaatttttggatgtaccatagaatttgcct 27800435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 16200783 - 16200910
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    ||||||| |||| ||| | |||||| ||||| || ||||||| ||||||||||||  ||| ||||||||  |||||||||||| ||| ||||| |||||     
T  16200783 cgtcgatgcttttggttaataagatttaatttttataattgtcaatgatagaaaataattatttttctttaaaaaaacaactcatttaaatattaattta 16200882  T
Q  301 atgatttggtgcactggtgcactcaaat 328  Q
    || |||||||| | || | |||||||||    
T  16200883 attatttggtgtattgttacactcaaat 16200910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 9682299 - 9682432
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    |||||| |||||||| |||||||  |||||||||||  ||| ||||| |   |||| ||||||| ||| | ||| ||||| ||||||||||| || |||     
T  9682299 taagatttaattattataattgtcgatgatagaaaataattttttttttcacaaaacacaactcatttaattattaatttaatgatttggtgtaccggta 9682398  T
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||||||  || |||||| ||||||||    
T  9682399 cactcaaatttttggatgcaccataaaatttgcc 9682432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 351
Target Start/End: Original strand, 40379245 - 40379365
Alignment:
Q  231 tattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatg-aatttgatgatttggtgcactggtgcactcaaatt 329  Q
    |||| |||||||||||||||||| || ||| ||||||||  ||||| |||||||||| | |||  ||||| | ||||||||| || ||| ||||||||||    
T  40379245 tattataattgttaatgatagaatacaattgtttttctta-aaaaagcaactcgtttaattatttaatttaacgatttggtgtaccggtacactcaaatt 40379343  T
Q  330 tttgagtgtaccatagaatttg 351  Q
    ||| ||| ||||||| ||||||    
T  40379344 ttttagtataccataaaatttg 40379365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 346
Target Start/End: Complemental strand, 1583799 - 1583655
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttctt-cgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| ||||| |||| |||||| |||||||| ||||||| ||||||| ||||  ||||||||||||   ||||||||| |  ||| | ||| ||||| |    
T  1583799 tcgatgctttccgtaaataagatttaattattataattgtcaatgataaaaaataattctttttcttaaaaaaaaacaatttatttaattattaatttaa 1583700  T
Q  302 tgatttggtgcactggtgcactcaaatttttgagtgtaccataga 346  Q
    |||||||||| || | | || ||||||||||| |||||| |||||    
T  1583699 tgatttggtgtacagatacattcaaatttttgggtgtactataga 1583655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 32823075 - 32823007
Alignment:
Q  215 gtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||| |||||| |||||||| ||||||| | ||||||||||| |||||||||| || ||||||||||||    
T  32823075 gtaaataagatttaattattataattgtcagtgatagaaaacaattctttttcgtcaaaaaaacaactc 32823007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 24505237 - 24505123
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| |||| |||||| || | | ||| ||||||| ||| |||    
T  24505237 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttatgacttggtgtaccgatacacccaaatttattgggtg 24505139  T
Q  338 taccatagaatttgcc 353  Q
    ||||||||||||||||    
T  24505138 taccatagaatttgcc 24505123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 15090812 - 15090667
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| | | | ||| ||||| | ||||||    
T  15090812 cttttggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcatgt-attattaattttacgatttg 15090714  T
Q  309 gtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcct 354  Q
    ||| || | | ||| ||||||| ||| ||||||||||||||||||||    
T  15090713 gtgtaccgatacacccaaatttattgggtgtaccatagaatttgcct 15090667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 27569628 - 27569678
Alignment:
Q  303 gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||| || ||| ||||||||||||| ||||||||||||||||||||    
T  27569628 gatttggtgtaccggtacactcaaattttttagtgtaccatagaatttgcc 27569678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 25867049 - 25866905
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| ||| || |||||||  || |||| ||||||| ||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||    
T  25867049 cttttggtaaataaaatttaattatcttagttgtcaatgataaaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttg 25866951  T
Q  309 gtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcc 353  Q
    ||| |||| | ||| ||||||| ||| |||||||||||||||||||    
T  25866950 gtgtactgatacacccaaatttattgggtgtaccatagaatttgcc 25866905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 43750108 - 43750075
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||||||||||||||||||||||||||    
T  43750108 cactcaaatttttgagtgtaccatagaatttgcc 43750075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 2088900 - 2088868
Alignment:
Q  321 actcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||||||||||||||||||||||||||||    
T  2088900 actcaaatttttgagtgtaccatagaatttgcc 2088868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 10210035 - 10209983
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |||||||| || ||| ||||||||| ||||| |||||||||||||||||||||    
T  10210035 atttggtgtaccggtacactcaaatatttgaatgtaccatagaatttgcctaa 10209983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 27130839 - 27130950
Alignment:
Q  243 taatgatagaaaacgattctttttcttc-gaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtgtac 340  Q
    |||||||||||||  ||| |||||||||  |||||||||||| ||| | ||| ||||| |||| |||||| || ||| ||| ||||||| ||| ||||||    
T  27130839 taatgatagaaaataattatttttcttcaaaaaaaacaactcattt-attattaattttatgacttggtgtaccggtacacccaaatttattgggtgtac 27130937  T
Q  341 catagaatttgcc 353  Q
    |||||||||||||    
T  27130938 catagaatttgcc 27130950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 40856799 - 40856859
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttctt 269  Q
    |||| ||||| |||||| |||||||| ||||||||||||||| ||||  ||||||||||||    
T  40856799 cttttggtaaataagatttaattattataattgttaatgataaaaaataattctttttctt 40856859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 364
Target Start/End: Complemental strand, 47220107 - 47219945
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||| ||||| ||| | ||| |||||     
T  47220107 cgtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaa-aactcattt-attattaatttt 47220010  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcctaatttttaac 364  Q
    | ||||||||| || | | ||| ||||||| ||| ||||||||||||||||||| |||| |||||    
T  47220009 acgatttggtgtaccgatacacccaaatttattgggtgtaccatagaatttgccaaattattaac 47219945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 41311103 - 41311053
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||| || ||| |||||||| | ||||||||||||||||||||||||    
T  41311103 atttggtgtaccggtacactcaaaatgttgagtgtaccatagaatttgcct 41311053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 7574377 - 7574450
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaact 282  Q
    |||| ||||| ||| || |||||||| || |||| ||||||||||||  ||| ||||||||| |||||||||||    
T  7574377 cttttggtaaataaaatttaattattatagttgtcaatgatagaaaataattatttttcttcaaaaaaacaact 7574450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 34363986 - 34364019
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||| |||||||||||||||||||||||||    
T  34363986 cactcaaacttttgagtgtaccatagaatttgcc 34364019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 43541933 - 43541804
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| | ||| |||||| | |||||| ||||||| ||||||||||||  |||||||||  ||  ||||||||||| ||| | | | |||||     
T  43541933 cgtcgaaacttttgataaataagatttgattattataattgtcaatgatagaaaataattcttttttatcagaaaaacaactcatttaattgttaattta 43541834  T
Q  301 atgatttggtgcactggtgcactcaaattt 330  Q
      ||||||||| || ||| |||||||||||    
T  43541833 tcgatttggtgtaccggtacactcaaattt 43541804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 356
Target Start/End: Original strand, 45857749 - 45857883
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    |||||| |||||||| ||||| |   ||||||||||| ||| ||| ||||| |||||| ||| | ||| | ||| ||||| ||||||||||| ||   |     
T  45857749 taagatttaattattataattataggtgatagaaaacaatt-tttctcttc-aaaaaataacacatttaactattaatttaatgatttggtgtaccaata 45857846  T
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |||||| || |||| ||||||||||||||||||||||    
T  45857847 cactcatatctttgggtgtaccatagaatttgcctaa 45857883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 201 - 350
Target Start/End: Complemental strand, 10821 - 10672
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  10821 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattttttttcttcgaaaaaacaactcgtttcaatatgaatttg 10722  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    ||||||||||| || ||| ||||||||||||| |||||||||||||||||    
T  10721 atgatttggtgtaccggtacactcaaattttttagtgtaccatagaattt 10672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 11001 - 10969
Alignment:
Q  4 tttacaatttaacgattatgttatgaaataaaa 36  Q
    ||||||||||||||||||| |||||||||||||    
T  11001 tttacaatttaacgattattttatgaaataaaa 10969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 7886029 - 7885876
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7886029 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 7885930  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||| || || ||| |||||| |||||||| |||||||||||||||||||    
T  7885929 atgatttgatgtaccggtacactcagatttttgaatgtaccatagaatttgcct 7885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 357
Target Start/End: Original strand, 29107808 - 29107963
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29107808 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgataaaaaacaattctttt-cttcgaaaaaacaactcgtttcaatatgaatttg 29107906  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaat 357  Q
    ||||||||||| ||  || ||||||||||||||||| ||  |||||||||| |||||    
T  29107907 atgatttggtgtacaagtacactcaaatttttgagtatataatagaatttgtctaat 29107963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 44578916 - 44579019
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44578916 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 44579015  T
Q  308 ggtg 311  Q
    ||||    
T  44579016 ggtg 44579019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 31893606 - 31893743
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||| |||||||| || |||     
T  31893606 taagatctaattattataattgttaatgatagaaaacaattctttttcttcaaaagaacaactcgtttcaatattaatttgataatttggtgtaccggta 31893705  T
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaat 357  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  31893706 cacttaaatttttgagtgtaccgtagaatttgcctaat 31893743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 38765001 - 38765083
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaa 290  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38765001 acttttggtaactaagatctaattattataattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaa 38765083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 27970156 - 27970011
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||| | ||| ||| | || |||||    
T  27970156 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacaattatttttcttcaaaaaaacaactcgtttaactattaatataataatttg 27970057  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||| ||| |||||||||| ||| ||||||||||||||||||||    
T  27970056 gtgcaccggtacactcaaattgttgggtgtaccatagaatttgcct 27970011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 34047683 - 34047823
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaa-aacaactcgtttcaatatgaatttgatgatttggtgc 312  Q
    ||||| || ||| |||||||||||||||| |||||||||||||  |||||||||||| |||| |||||||||||| |  || ||||| || ||||||||     
T  34047683 ggtaaatacgatttaattattgtaattgtcaatgatagaaaacagttctttttcttcaaaaaaaacaactcgtttaatcattaatttaataatttggtgt 34047782  T
Q  313 actggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || ||| |||||||||| ||| |||||||||||||||||||    
T  34047783 accggtacactcaaattgttgggtgtaccatagaatttgcc 34047823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 9712663 - 9712770
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||| ||| |||||||||||||||  |||||| ||| ||||| ||||||||||||  || ||||||||||||||||||| ||||||    
T  9712663 cgtcgacacttttggtaaataatatctaattattgtaacagttaataataaaaaacaattctttttcttaaaacaaacaactcgtttcaatattaatttg 9712762  T
Q  301 atgatttg 308  Q
    ||||||||    
T  9712763 atgatttg 9712770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 12801239 - 12801105
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat-gatttggtgcactggt 318  Q
    |||||| |||||||| ||||||||||||||| ||||  ||||||||||||  ||| |||||||| ||| |  || ||||  || ||||||||| || |||    
T  12801239 taagatttaattattataattgttaatgatataaaataattctttttcttaaaaacaacaactcatttgatcattaatt--atcgatttggtgtaccggt 12801142  T
Q  319 gcactcaaatttttgagtgtaccatagaatttgccta 355  Q
     |||||||||||||| |||||||||||||||||||||    
T  12801141 acactcaaatttttgggtgtaccatagaatttgccta 12801105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 355
Target Start/End: Original strand, 12633185 - 12633314
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattct-ttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactca 325  Q
    |||||||| ||||||| ||||||||||||  ||||| |||||||| |||||||||||   || | ||| ||||| ||| ||||||| | |||| ||||||    
T  12633185 taattattataattgtcaatgatagaaaataattctcttttcttcaaaaaaacaactaacttaattattaatttaatgctttggtgtaatggtacactca 12633284  T
Q  326 aatttttgagtgtaccatagaatttgccta 355  Q
    || | ||| |||||||||||||||||||||    
T  12633285 aaatgttgggtgtaccatagaatttgccta 12633314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 32071503 - 32071650
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttc---gaaaaaacaactcgtttcaatatgaatttgatgat 305  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  |||||||||||||    |||||||||||||| | | ||| ||||| | |||    
T  32071503 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattctttttcttcaaaaaaaaaacaactcgtataattattaatttaacgat 32071602  T
Q  306 ttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || ||| || | | |||||||||||||  |||||||||| ||||||||    
T  32071603 ttcgtgtaccgattcactcaaatttttcggtgtaccataaaatttgcc 32071650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 42165166 - 42165311
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||   || ||||||||| |||||| ||||||||| | ||| ||||| || |||||    
T  42165166 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaaaagttgtttttcttcaaaaaaataactcgtttaattattaatttaataatttg 42165265  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
     |  || ||| || ||||||| |||  ||||||||| |||||||||    
T  42165266 atataccggtacattcaaattgttggatgtaccatataatttgcct 42165311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 356
Target Start/End: Original strand, 2880192 - 2880338
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||||||    ||| | ||| ||||| ||| |||    
T  2880192 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattattaatttaatg-ttt 2880289  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |||| || ||| |||||||| | ||||||||||||||||||||||||||    
T  2880290 ggtgtaccggtacactcaaaatgttgagtgtaccatagaatttgcctaa 2880338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 417728 - 417669
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaatttttaa 363  Q
    |||||||| |||||| |||||||| | |||||||||||||||||||||||||||| ||||    
T  417728 atttggtgtactggtacactcaaaatattgagtgtaccatagaatttgcctaattattaa 417669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 352
Target Start/End: Original strand, 15259318 - 15259391
Alignment:
Q  279 aactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgc 352  Q
    ||||||||||||||| ||||||||||| ||||| || ||| ||||| ||||||||||||| || || |||||||    
T  15259318 aactcgtttcaatattaatttgatgatatggtgtaccggtacactcgaatttttgagtgtgccgtaaaatttgc 15259391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 352
Target Start/End: Original strand, 35754737 - 35754862
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaa 326  Q
    ||||||||| |||||| ||||||| |||||  |||||||||||| |||||||||||| ||| | ||| ||||| || ||||| || |  ||| ||  |||    
T  35754737 taattattggaattgtcaatgataaaaaacagttctttttcttcaaaaaaacaactcatttaattattaatttaataatttgatgtatcggtacatgcaa 35754836  T
Q  327 atttttgagtgtaccatagaatttgc 352  Q
    ||| ||| || |||||||||||||||    
T  35754837 attgttgggtataccatagaatttgc 35754862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 355
Target Start/End: Original strand, 17838599 - 17838744
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| |||||| ||||| || |||||||  |||| ||||||  ||| ||||||||  |||||||||||| ||| || || ||||| || |||||    
T  17838599 cttttggtaaataagatttaatttttataattgtcgatgaaagaaaataattatttttctta-aaaaaacaactcatttaaaaattaatttaattatttg 17838697  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||| ||  || ||||||||| ||||||  ||||||||||||| ||||    
T  17838698 gtgtacccgtacactcaaatatttgagcataccatagaattttccta 17838744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 353
Target Start/End: Complemental strand, 41674616 - 41674484
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggt 318  Q
    |||||| |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||||||    ||| | ||| ||||| ||| ||||||| || |||    
T  41674616 taagatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattattaatttaatg-tttggtgtaccggt 41674519  T
Q  319 gcactcaaatttttgagtgtaccatagaatttgcc 353  Q
     |||||||| | |||||||||||||||||||||||    
T  41674518 acactcaaaatgttgagtgtaccatagaatttgcc 41674484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 19718699 - 19718760
Alignment:
Q  295 aatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    ||||| ||||||||||| |||  | ||||||||||||||  |||||||||||||||||||||    
T  19718699 aatttaatgatttggtgtactaatacactcaaatttttggatgtaccatagaatttgcctaa 19718760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 5982449 - 5982517
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaa 277  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  ||| ||||||||| ||||||    
T  5982449 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattatttttcttcaaaaaaa 5982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 28897196 - 28897310
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| |||| |||||| ||   | ||| ||||||| ||| |||    
T  28897196 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttatgacttggtgtaccaatacacccaaatttattgggtg 28897294  T
Q  338 taccatagaatttgcc 353  Q
    ||||||||||||||||    
T  28897295 taccatagaatttgcc 28897310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 41956 - 41990
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||| |||||||||||||||||||||||||    
T  41956 cactcaaatatttgagtgtaccatagaatttgcct 41990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 32888031 - 32888065
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||| |||||||||||||||||||||||||    
T  32888031 cactcaaatatttgagtgtaccatagaatttgcct 32888065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 38971616 - 38971534
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||||| ||||| ||||  ||| || |||||||| || |||| ||||||||||||  ||| ||||||||| ||||||||||||    
T  38971616 cgtcgaaacttttggtatataaaatttaattattttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactc 38971534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 39002714 - 39002632
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||||| ||||| ||||  ||| || |||||||| || |||| ||||||||||||  ||| ||||||||| ||||||||||||    
T  39002714 cgtcgaaacttttggtatataaaatttaattattttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactc 39002632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 39722080 - 39721970
Alignment:
Q  244 aatgatagaaaacgattctttttcttcgaaaaaa-caactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtacca 342  Q
    ||||||||||||  ||| ||||||||  |||||| ||| || ||| ||||| ||||| || || || || || | | ||||||||| |||||||||||||    
T  39722080 aatgatagaaaataattttttttcttaaaaaaaaacaattcatttaaatattaatttaattatctgatgtacggatacactcaaatatttgagtgtacca 39721981  T
Q  343 tagaatttgcc 353  Q
    |||||||||||    
T  39721980 tagaatttgcc 39721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 40824607 - 40824561
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaa 255  Q
    |||| ||||| |||||| |||||||| ||||||||||||||||||||    
T  40824607 cttttggtaaataagatttaattattataattgttaatgatagaaaa 40824561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 7223609 - 7223553
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||||||| || |||| ||||||||||||  ||| ||||||||| ||||||||||||    
T  7223609 taattattttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactc 7223553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 353
Target Start/End: Original strand, 26439894 - 26439930
Alignment:
Q  318 tgcactcaaatttt-tgagtgtaccatagaatttgcc 353  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26439894 tgcactcaaattttttgagtgtaccatagaatttgcc 26439930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 29698577 - 29698729
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  29698577 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaattag 29698676  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||| || ||| ||||||||||||||| | ||||||||||||||||    
T  29698677 atgatttggtgtaccggtacactcaaatttttgaatataccatagaatttgcc 29698729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 43903217 - 43903074
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43903217 actttcggtaactaagatctaattattgtaatttttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 43903118  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    |||| || ||| ||||||||||||| ||||||||||||||||||    
T  43903117 ggtgtaccggtacactcaaatttttaagtgtaccatagaatttg 43903074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 216 - 356
Target Start/End: Original strand, 32122169 - 32122309
Alignment:
Q  216 taactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcact 315  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||     
T  32122169 taactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatataaatttgatgatttagtgtacc 32122268  T
Q  316 ggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    ||| |||| ||||||||||||||||||||||||||||||||    
T  32122269 ggtacacttaaatttttgagtgtaccatagaatttgcctaa 32122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 8353331 - 8353422
Alignment:
Q  216 taactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  8353331 taactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatataaatttaatgattt 8353422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 27525341 - 27525192
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| | ||| |||||||||  |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| || ||     
T  27525341 cgtcgacacttttgttaaataagatctagctattgtaattgttaatgatagaaaacaattatttttcttcaaaaaaacaactcgtttcaatattaaatta 27525242  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||| |  |||||||||||    |||||||||||||| ||||||||    
T  27525241 atgatttggtgtatcggtgcactcaa---gttgagtgtaccataaaatttgcc 27525192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 27102848 - 27103011
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttc-------gaaaaaacaactcgtttcaatat 293  Q
    |||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||    
T  27102848 cgtcgacacttttgataaataagatctaattattgtaattgttaatgatagaaaacaattctttttcttcaaaaaaaaaaaaaacaactcgtttcaatat 27102947  T
Q  294 gaatttgatgatttggtgcactggtgcactcaaatttttgagt----gtaccatagaatttgccta 355  Q
     |||||||||| |||||| || ||| |||||||| ||||||||    |||||||||||||||||||    
T  27102948 taatttgatga-ttggtgtaccggtacactcaaa-ttttgagtgtacgtaccatagaatttgccta 27103011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 203 - 353
Target Start/End: Original strand, 28718184 - 28718333
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat 302  Q
    ||||| |||| ||||| || ||| ||| |||| ||||| | |||||||||||| |||| ||||||||| |||||||||||  ||| | ||| ||||| |     
T  28718184 tcgatgcttttggtaaataggatttaagtattataattttcaatgatagaaaatgattttttttcttc-aaaaaacaactaatttaattattaatttaaa 28718282  T
Q  303 gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    | |||||||||| ||| |||||||| ||||| |||||||||||||||||||    
T  28718283 ggtttggtgcaccggtacactcaaaattttgggtgtaccatagaatttgcc 28718333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 14998405 - 14998556
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||| |||||| |||||||| ||||||||||||||| ||||  |||| |||||||  ||| |||||||| ||| |  || ||||      
T  14998405 cgtcgaaacttttggtaaataagatttaattattataattgttaatgataaaaaataattcattttcttaaaaacaacaactcatttaatcattaatt-- 14998502  T
Q  301 at-gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || ||||||||| || ||| |||||||||||||| |||||||||| ||||||||    
T  14998503 atcgatttggtgtaccggtacactcaaatttttgggtgtaccataaaatttgcc 14998556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 350
Target Start/End: Original strand, 52776710 - 52776856
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttc-----gaaaaaacaactcgtttcaatatgaatttgatg 303  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||   ||||||||||||      |||||||||||||||| | ||| ||||| ||     
T  52776710 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaatagttctttttcttcaaaaaaaaaaaacaactcgtttaattattaatttaata 52776809  T
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    |||||||| || ||| |||||||||| ||| |||||| |||||||||    
T  52776810 atttggtgtaccggtacactcaaattattgggtgtacgatagaattt 52776856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 29384827 - 29384684
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  ||| ||||||||| |||||||||||  ||| | ||| ||||| ||  ||||    
T  29384827 cttttggtaaataagatttaattattataattgtcaatgatagaaaataatt-tttttcttcaaaaaaacaactaatttaattattaatttaatattttg 29384729  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||  |||||| |||||| | | ||| |||||||||||||||||||    
T  29384728 gtatactggtacactcacaatgttgggtgtaccatagaatttgcc 29384684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 46936802 - 46936657
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat-gattt 307  Q
    |||| ||||| |||||| |||||||| ||||||||||||||| ||||  ||| ||||||||  ||| |||||||| ||| |  || ||||  || |||||    
T  46936802 cttttggtaaataagatttaattattataattgttaatgataaaaaataattatttttcttaaaaacaacaactcatttaatcattaatt--atcgattt 46936705  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    |||| || ||| |||||||||||||  |||||||||||||||||||||    
T  46936704 ggtgtaccggtacactcaaattttttggtgtaccatagaatttgccta 46936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 4393126 - 4392972
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaaca--actcgtttcaatatgaatttgatgatt 306  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||| |  |||||||||||  |||||| |  |||||||| | ||| ||||| || |||    
T  4393126 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaccagttctttttcttaaaaaaaaaataactcgtttaattattaatttaataatt 4393027  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaattttt 361  Q
    || || ||   | |||||||||| || ||||||| ||||||||||||||||||||    
T  4393026 tgatgtacccctacactcaaattgttaagtgtactatagaatttgcctaattttt 4392972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 32720129 - 32719985
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| ||| || |||||||  ||||||||||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||    
T  32720129 cttttggtaaataaaatttaattatcttaattgttaatgatagaaaataattatttttcttctaaaaaacaactcattt-attattaattttacgacttg 32720031  T
Q  309 gtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcc 353  Q
    ||| || | | ||| ||||||| ||| |||||||||||||||||||    
T  32720030 gtgtaccgatacacccaaatttattgggtgtaccatagaatttgcc 32719985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 15804403 - 15804256
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaat-atgaatttgatgatt 306  Q
    |||| ||||| |||||| |||||||| ||||| | ||||||||||||  ||||||||| |||| |||||||||||   || ||| || ||||| ||| ||    
T  15804403 cttttggtaaataagatttaattattataattatcaatgatagaaaataattcttttttcttc-aaaaaacaactaaatttaattattaatttaatgctt 15804305  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||||| | |||| |||||||| | ||| |||||||||||||||||||||    
T  15804304 tggtgtaatggtacactcaaaatgttgggtgtaccatagaatttgccta 15804256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 351
Target Start/End: Original strand, 5532319 - 5532449
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    |||||| ||||| || ||||| | ||||||||||||  ||||||||||||| |||||| |||||  || ||||| ||||| || |||||||| || |||     
T  5532319 taagatttaatttttataattatcaatgatagaaaataattctttttcttc-aaaaaaaaactcaattaaatattaatttaattatttggtgtaccggta 5532417  T
Q  320 cactcaaatttttgagtgtaccatagaatttg 351  Q
    ||||||||| |||   ||||||||||||||||    
T  5532418 cactcaaatatttagatgtaccatagaatttg 5532449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 26001338 - 26001193
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||||||    ||| | ||| ||||| ||| |||    
T  26001338 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattattaatttaatg-ttt 26001241  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    |||| || ||| |||||||| | |||||||||||||||||||||||||    
T  26001240 ggtgtaccggtacactcaaaatattgagtgtaccatagaatttgccta 26001193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 358
Target Start/End: Original strand, 36790150 - 36790298
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||||||    ||| | ||| ||||| ||| |||    
T  36790150 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattattaatttaatg-ttt 36790247  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaatt 358  Q
    |||| || | | |||||||| | ||||||||||||||||||||||||||||    
T  36790248 ggtgtaccgatacactcaaaatgttgagtgtaccatagaatttgcctaatt 36790298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 356
Target Start/End: Complemental strand, 42622744 - 42622606
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaat-atgaatttgatgatttggtgcactggt 318  Q
    |||||| ||| |||| ||||||| |||| |||||||  |||  ||||||||  ||||||||||| ||| | | || ||||| | ||||||||| ||||||    
T  42622744 taagatttaaatattataattgtcaatgctagaaaataattaattttcttcagaaaaacaactcatttaatttattaatttaacgatttggtgtactggt 42622645  T
Q  319 gcactcaaattttt-gagtgtaccatagaatttgcctaa 356  Q
     ||||||| ||||| | ||||||||||||||||||||||    
T  42622644 acactcaatttttttgggtgtaccatagaatttgcctaa 42622606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 351
Target Start/End: Original strand, 51996680 - 51996822
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| ||| || |||||||| ||||||| |||||||||||   |||||||||  |  |||||||||||  ||| | ||| ||||| ||| ||||    
T  51996680 cttttggtaaataaaatttaattattataattgtcaatgatagaaagtaattcttttttctttaaaaaacaactaatttaattattaatttaatgctttg 51996779  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
     || |||||| |||||||| | ||| |||||||||||||||||    
T  51996780 atgtactggtacactcaaaatgttgggtgtaccatagaatttg 51996822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 351
Target Start/End: Original strand, 11510984 - 11511125
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcga-aaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||||||||||| |||||||||||||  |||||||||  | |  |||||||||||||| | ||| ||||| || ||||    
T  11510984 cttttggtaaataagatttaattattgtaattgtcaatgatagaaaacagttctttttc--caacgaaaacaactcgtttaattattaatttaataattt 11511081  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttg 351  Q
    |||| || |||  ||||||||| |||  |||| |||| ||||||    
T  11511082 ggtgtaccggtaaactcaaattgttggttgtaacataaaatttg 11511125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 21289186 - 21289222
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |||||||||||||||||||||||||||||||||||||    
T  21289186 cactcaaatttttgagtgtaccatagaatttgcctaa 21289222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 358
Target Start/End: Original strand, 48925704 - 48925823
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||||| || | | || |||||||| ||| |||    
T  48925704 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttggtgtaccgatacattcaaatttattgggtg 48925802  T
Q  338 taccatagaatttgcctaatt 358  Q
    |||||||||||||||||||||    
T  48925803 taccatagaatttgcctaatt 48925823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 27647511 - 27647476
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgccta 355  Q
    ||||||||||||||||||||||||||||||||||||    
T  27647511 cactcaaatttttgagtgtaccatagaatttgccta 27647476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 33830644 - 33830528
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||| ||| |||||||||||| ||| | ||| ||||| |||| |||||| || | | ||| ||||||| ||| |||    
T  33830644 ttgtcaatgatagaaaataattattttttttcaaaaaaacaactcattt-attattaattttatgacttggtgtaccgatacacccaaatttattgggtg 33830546  T
Q  338 taccatagaatttgccta 355  Q
    ||||||||||||||||||    
T  33830545 taccatagaatttgccta 33830528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 45927364 - 45927220
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | ||||||    
T  45927364 cttttggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgatttg 45927266  T
Q  309 gtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcc 353  Q
    ||| || | | ||| ||||||| ||| |||||||||| ||||||||    
T  45927265 gtgtaccgatacacccaaatttattgggtgtaccataaaatttgcc 45927220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 52058878 - 52058914
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    ||||||||| |||||||||||||||||||||||||||    
T  52058878 cactcaaatatttgagtgtaccatagaatttgcctaa 52058914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 44500413 - 44500523
Alignment:
Q  244 aatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtgtacca 342  Q
    ||||||||||||  ||| | ||||||| |||||||||||| ||| | ||| ||||| | || |||||| || | ||||| ||||||| ||| ||||||||    
T  44500413 aatgatagaaaataattatctttcttcaaaaaaacaactcattt-attattaattttacgacttggtgtaccgatgcacccaaatttattgggtgtacca 44500511  T
Q  343 tagaatttgcct 354  Q
    ||||||||||||    
T  44500512 tagaatttgcct 44500523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 48795701 - 48795820
Alignment:
Q  228 aattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaa 327  Q
    ||||||| |||||||  |||||||||||  ||| ||||||||  ||||||| |||  ||| | ||  ||||| ||||||||||| || ||| |||| |||    
T  48795701 aattattataattgtcgatgatagaaaataattttttttcttaaaaaaaactacttattttattaataatttaatgatttggtgtaccggtacacttaaa 48795800  T
Q  328 tttttgagtgtaccatagaa 347  Q
    |||||  |||||||||||||    
T  48795801 tttttaggtgtaccatagaa 48795820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 5639702 - 5639668
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||| |||||||||||||||||||||||||    
T  5639702 cactcaaatatttgagtgtaccatagaatttgcct 5639668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 11140280 - 11140242
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaatt 358  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  11140280 cactcaaattattgggtgtaccatagaatttgcctaatt 11140242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 44500175 - 44500129
Alignment:
Q  313 actggtgcactcaaatttttgagtgtaccatagaatttgcctaattt 359  Q
    |||||| |||||||| || ||||||||||||||||||| ||||||||    
T  44500175 actggtacactcaaaattgtgagtgtaccatagaatttccctaattt 44500129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 15298506 - 15298578
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgttt 287  Q
    ||||| || ||| |||||||||||||||| ||||||| ||| |  |||||||||||  ||||||||||||||||    
T  15298506 ggtaaatacgatttaattattgtaattgtcaatgataaaaaccagttctttttctt-aaaaaaacaactcgttt 15298578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 38296978 - 38296885
Alignment:
Q  264 tttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaat 357  Q
    ||||||| |||||||||||| ||| | ||  ||||| |  |||||||| |  ||| ||||||||| |||  |||||||||||||||||||||||    
T  38296978 tttcttcaaaaaaacaactcatttgattaataatttaacaatttggtgtatcggtacactcaaatatttaggtgtaccatagaatttgcctaat 38296885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 42067612 - 42067575
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaat 357  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  42067612 cactcaaattgttgggtgtaccatagaatttgcctaat 42067575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 354
Target Start/End: Original strand, 52782415 - 52782567
Alignment:
Q  202 gtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| |    
T  52782415 gtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttta 52782513  T
Q  302 tgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcct 354  Q
     || |||||| || | | ||| ||||||| |||  |||||||||||||||||||    
T  52782514 cgacttggtgtaccgatacacccaaatttattggatgtaccatagaatttgcct 52782567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 53516954 - 53516987
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||||| ||||||||||||||||||||    
T  53516954 cactcaaatttttaagtgtaccatagaatttgcc 53516987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 2667598 - 2667483
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||  ||||||||| |||||||||||| ||| | ||| ||||| |||| |||||| || | | ||| | ||||| ||| |||    
T  2667598 ttgtcaatgatagaaaataataatttttcttcaaaaaaacaactcattt-attattaattttatgacttggtgtaccgatacaccctaatttattgggtg 2667500  T
Q  338 taccatagaatttgcct 354  Q
    |||||||||||||||||    
T  2667499 taccatagaatttgcct 2667483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 28146672 - 28146728
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaatttt 360  Q
    |||||||| |||||| |||||||| | |||  |||||||||||||||||| ||||||    
T  28146672 atttggtgtactggtacactcaaaatgttggatgtaccatagaatttgccaaatttt 28146728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 17809283 - 17809435
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||     
T  17809283 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgttttaatatgaatttc 17809382  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    || |||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  17809383 ataatttggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcc 17809435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 41555679 - 41555831
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  41555679 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattttttttcttcgaaaaaacaactcgtttcaatatgaatttg 41555778  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||| || | | |||| |||||||||||||||||||||||||||||    
T  41555779 atgatttggtgtaccgatacacttaaatttttgagtgtaccatagaatttgcc 41555831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 202 - 353
Target Start/End: Original strand, 15362725 - 15362875
Alignment:
Q  202 gtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||  |||| |||||||||||||||||||||||||    
T  15362725 gtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattcttttttttttaaaa-acaactcgtttcaatatgaatttga 15362823  T
Q  302 tgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  15362824 tgatttggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcc 15362875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 201 - 350
Target Start/End: Original strand, 713603 - 713753
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcg-aaaaaacaactcgtttcaatatgaattt 299  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||     
T  713603 cgtcgacactttcgataactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaaacaactcgtttcaatataaatta 713702  T
Q  300 gatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    |||||||||||| || | | |||| ||||||||||||||||||||||||||    
T  713703 gatgatttggtgtaccgatacacttaaatttttgagtgtaccatagaattt 713753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 38600072 - 38600217
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  38600072 acttttggtaactaagatcaaattactgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaattcgtttcaatataaatttgatgattt 38600171  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||| ||  || |||| ||||||||||||||| |||||||||||||    
T  38600172 ggtgtacgagtacacttaaatttttgagtgtatcatagaatttgcc 38600217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 39089870 - 39090025
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacga---ttctttttcttcgaaaaaacaactcgtttcaatatgaat 297  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||  |   || ||||||||||||||||||||||||||||||||||||    
T  39089870 cgtcgatactttcgataactaagatctaattattgtaattgttaatgattgaaaaaaaaaattatttttcttcgaaaaaacaactcgtttcaatatgaat 39089969  T
Q  298 ttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||||||||| || ||| ||||||||||||||||| || |||| ||||||||    
T  39089970 ttgatgatttggtgtaccggttcactcaaatttttgagtatatcatataatttgcc 39090025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 220 - 362
Target Start/End: Original strand, 22622690 - 22622832
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||||||  |||||||||||||||||||||| || || ||||||| ||| || ||||    
T  22622690 taagatctagttattgtaattgttaatgatagaaaacaattatttttctttaaaaaaacaactcgtttcaatattaaattaatgatttagtgtaccggtg 22622789  T
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaattttta 362  Q
    ||||||| || |||||||||||||| ||||||||| |||||||    
T  22622790 cactcaagttcttgagtgtaccataaaatttgccttattttta 22622832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 15334337 - 15334460
Alignment:
Q  230 ttattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatt 329  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||| ||||| || || ||| |||| |||||    
T  15334337 ttattgtaattattaatgatagaaaacaattctttttcttcaaaaaaacaactcgcttcaatattaatttgataatttgatgtaccggtacacttaaatt 15334436  T
Q  330 tttgagtgtaccatagaatttgcc 353  Q
    ||||| ||||||||| ||||||||    
T  15334437 tttgaatgtaccatataatttgcc 15334460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 34852597 - 34852697
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacga-ttctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||| ||||||||||||| ||||||||| ||||||||||||    
T  34852597 actttcggtaactaagatctaattattgtaattgttaatgatagaaaataatttttttttctttgaaaaaacaactcttttcaatataaatttgatgatt 34852696  T
Q  307 t 307  Q
    |    
T  34852697 t 34852697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 40810571 - 40810460
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttc-gaaaaaacaactcgtttcaatatgaattt 299  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||||||  |||||| || ||||||||||||||||||    
T  40810571 cgtcgacactttcgataactaagatctaattattgtaattattaatgacataaaacgattctttttcttcaaaaaaaataattcgtttcaatatgaattt 40810472  T
Q  300 gatgatttggtg 311  Q
     || ||||||||    
T  40810471 aataatttggtg 40810460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 15426285 - 15426405
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| || ||| |||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||| || |||||    
T  15426285 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacggttctttttcttcaaaaaaacaactcgtttaattattaatttaataatttg 15426384  T
Q  309 gtgcactggtgcactcaaatt 329  Q
    ||| || ||| ||||||||||    
T  15426385 gtgtaccggtacactcaaatt 15426405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 203 - 354
Target Start/End: Original strand, 42641107 - 42641258
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat 302  Q
    ||||| |||| ||||| || ||| ||| |||| ||||| | |||||||||||| |||| ||||||||| |||||||||||  ||| | ||| ||||| |     
T  42641107 tcgatgcttttggtaaataggatttaagtattataattttcaatgatagaaaatgattttttttcttcaaaaaaacaactaatttaattattaatttaaa 42641206  T
Q  303 gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    | |||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  42641207 ggtttggtgcaccggtacactcaaaattttgggtgtaccatagaatttgcct 42641258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 8362667 - 8362813
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaa-aacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| || ||| |||||||||||||||| |||||||||||||  || ||||||||| |||| |||||||||||| | ||| ||||| || ||||    
T  8362667 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacagttatttttcttcaaaaaaaacaactcgtttaattattaatttaataattt 8362766  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||| || ||| |||||||||| ||| ||||  ||||||||||||||    
T  8362767 ggtgtaccggtacactcaaattgttgggtgtgtcatagaatttgcct 8362813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 201 - 349
Target Start/End: Original strand, 45690755 - 45690902
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||| |||||| |||||||| ||||||||||||||| ||||  ||||||||||||  ||| |||||||| ||| |  || ||||      
T  45690755 cgtcgaaacttttggtaaataagatttaattattataattgttaatgataaaaaataattctttttcttaaaaacaacaactcatttaatcattaatt-- 45690852  T
Q  301 at-gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatt 349  Q
    || ||||||||| || ||| |||||||||||||| |||||||||||||||    
T  45690853 atcgatttggtgtaccggtacactcaaatttttgggtgtaccatagaatt 45690902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 4786431 - 4786362
Alignment:
Q  284 gtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||||||||||||||||||||||| |  ||| |||| |||||||||||||||||||||||||||||    
T  4786431 gtttcaatatgaatttgatgatttggtgtatcggtacacttaaatttttgagtgtaccatagaatttgcc 4786362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 40287967 - 40288111
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| |||||| | |||||| ||||||| ||||||||||||  ||||||||||||| |||||||||||| ||| |   | ||||| | ||||||    
T  40287967 cttttggtaaataagatttgattattataattgtgaatgatagaaaataattctttttcttc-aaaaaacaactcatttaatggttaatttaacgatttg 40288065  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||| || ||| |||||||| |||||| ||||||||| |||||||||    
T  40288066 gtgtaccggtacactcaaaattttgaatgtaccataaaatttgcct 40288111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 38073363 - 38073514
Alignment:
Q  203 tcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat 302  Q
    ||||| |||| ||||| || ||| ||| |||| ||||| | ||||||||||||  ||| ||||||||| |||||||||||  ||| | ||| ||||| |     
T  38073363 tcgatgcttttggtaaataggatttaagtattataattttcaatgatagaaaataattttttttcttc-aaaaaacaactaatttgattattaatttaaa 38073461  T
Q  303 gatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    | |||||||||| ||| |||||||| |||||  ||||||||||||||||||||    
T  38073462 ggtttggtgcaccggtacactcaaaattttggatgtaccatagaatttgccta 38073514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 12071281 - 12071158
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaa 326  Q
    |||||||||||||||| |||||||||||||  |||||||||||| ||| |||||||||||| | ||| ||||| || ||||  || ||   | |||||||    
T  12071281 taattattgtaattgtcaatgatagaaaacagttctttttcttcaaaagaacaactcgtttaattattaatttaataatttcatgtaccaatacactcaa 12071182  T
Q  327 atttttgagtgtaccatagaattt 350  Q
    ||| ||| || |||||||||||||    
T  12071181 attgttgggtataccatagaattt 12071158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 332
Target Start/End: Original strand, 2859605 - 2859723
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    ||||| |||||| |||||||| ||||| ||||||||||||||  ||| ||||| ||  |||||||||||| ||| | | | ||||||||||||| ||| |    
T  2859605 ggtaaataagatttaattattataattattaatgatagaaaataattatttttttttcaaaaaacaactcatttaattgttaatttgatgattttgtgta 2859704  T
Q  314 ctggtgcactcaaattttt 332  Q
    | ||| |||||||||||||    
T  2859705 ccggtacactcaaattttt 2859723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 358
Target Start/End: Complemental strand, 40533403 - 40533246
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| |||||     
T  40533403 cgtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttt 40533305  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcctaatt 358  Q
    | ||||||||| || | | ||| ||||||| ||| ||||||||||||||||||||||||    
T  40533304 acgatttggtgtaccgatacacccaaatttattgggtgtaccatagaatttgcctaatt 40533246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 356
Target Start/End: Complemental strand, 15176486 - 15176339
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||  ||||||||||||  ||| ||||| |||| ||||||||| |  |||   ||| ||||| ||| |||    
T  15176486 cttttggtaaataagatttaattattataattgcaaatgatagaaaataattattttttcttc-aaaaaacaattaatttacttattaatttaatgcttt 15176388  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    ||||||| ||| |||||||| | ||| ||||||||||||||||||||||    
T  15176387 ggtgcaccggtacactcaaaatattgggtgtaccatagaatttgcctaa 15176339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 15206003 - 15206143
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| |||||| |||||||| ||||  |||||||||||| | |||||||||||||| |||||||||||| ||    ||| ||||| | ||||||    
T  15206003 cttttggtaaataagatttaattattataatatttaatgatagaatatgattctttttcttc-aaaaaacaactcatt----tattaatttaacgatttg 15206097  T
Q  309 gtgcactggtgcactcaaatttttgag-tgtaccatagaatttgcc 353  Q
    ||| ||  || ||||||||||||| || |||| |||||||||||||    
T  15206098 gtgtaccagtacactcaaattttttagatgtatcatagaatttgcc 15206143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 354
Target Start/End: Original strand, 25332891 - 25333038
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttctt--cgaaaaaacaactcgtttcaatatgaatttgatgatt 306  Q
    |||| ||||| || ||| ||||| |||||||||| ||||||||||||    ||||||||||    |||||||||||| ||| | ||| ||||| || |||    
T  25332891 cttttggtaaatacgatttaattcttgtaattgtcaatgatagaaaagagatctttttcttaaaaaaaaaacaactcatttaattattaatttaataatt 25332990  T
Q  307 tggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||| |||||| |||| ||||| ||| |||||||||| |||||||||    
T  25332991 tggtgtactggtccacttaaattgttgggtgtaccataaaatttgcct 25333038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 360
Target Start/End: Complemental strand, 37725665 - 37725544
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||||| || | | ||| ||||||| ||| |||    
T  37725665 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttggtgtaccgatacacccaaatttattgggtg 37725567  T
Q  338 taccatagaatttgcctaatttt 360  Q
    |||||||||||||||||||||||    
T  37725566 taccatagaatttgcctaatttt 37725544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 25712984 - 25713057
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgttt 287  Q
    ||||| || ||| |||||||| ||||||| ||||||||||||   |||||||||||| ||||||||||||||||    
T  25712984 ggtaaatacgatttaattattataattgtcaatgatagaaaatagttctttttcttcaaaaaaacaactcgttt 25713057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 350
Target Start/End: Complemental strand, 37989181 - 37989034
Alignment:
Q  202 gtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| ||||| ||||| |||||| | |||||| | ||||| ||||||||||||  ||||||||||||  |||||| ||||| ||| | | | ||||| |    
T  37989181 gtcgaaacttttggtaaataagatttgattattatgattgtcaatgatagaaaataattctttttctt-aaaaaaaaaactcatttaattgttaatttaa 37989083  T
Q  302 tgatttggtgcactggtgcactcaaatttttgagtgtaccatagaattt 350  Q
    |||||||||| || ||| || ||||||||||    ||||||||||||||    
T  37989082 tgatttggtgtaccggtacattcaaatttttagacgtaccatagaattt 37989034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 4108450 - 4108306
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgatt-ctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||||||||| |||||| |||||||| ||||||| ||||||||||||  |||  ||||||||| |||||||||    ||| | ||| ||||| ||| |||    
T  4108450 ctttcggtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaatcaatttaattattaatttaatg-ttt 4108353  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||| || ||| |||||||| | |||  |||||||||||||||||||    
T  4108352 ggtgtaccggtacactcaaaatgttggatgtaccatagaatttgcct 4108306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 11088297 - 11088215
Alignment:
Q  272 aaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||||||| ||| | ||| ||||| |  |||||||| || ||| ||||||||| |||| ||||||||||||||||||||    
T  11088297 aaaaaacaactcttttaattattaatttaacaatttggtgtaccggtacactcaaatatttgggtgtaccatagaatttgcct 11088215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 33429276 - 33429132
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||| | |   ||| | ||| ||||| ||| |||    
T  33429276 cttttggtaaataagatttaattattataattgtcaatgatagaaaataattattttttcttcaaaaaaaaatcaa-tttaattattaatttaatg-ttt 33429179  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||| || ||| |||||||| | ||||||||||||||||||||||||    
T  33429178 ggtgtaccggtacactcaaaatgttgagtgtaccatagaatttgcct 33429132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 36947775 - 36947889
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||||| || | | ||| ||||||| ||| |||    
T  36947775 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttggtgtacagatacacccaaatttattgggtg 36947873  T
Q  338 taccatagaatttgcc 353  Q
    ||||||||||||||||    
T  36947874 taccatagaatttgcc 36947889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 37909437 - 37909374
Alignment:
Q  295 aatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaatt 358  Q
    |||||| ||||| |||| |||  | ||||||||||||||||||||| |||||||||||| ||||    
T  37909437 aatttgttgattgggtgtactaatacactcaaatttttgagtgtactatagaatttgccaaatt 37909374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 20212526 - 20212560
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||| ||||||||||||||||||||||||||||||    
T  20212526 cacttaaatttttgagtgtaccatagaatttgcct 20212560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 21425356 - 21425211
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| ||| || |||||||| || |||| ||||||||||||  ||| ||||||||  |||||||||||  ||| | ||| ||||| | || |||    
T  21425356 cttttggtaaataaaatttaattattatagttgtcaatgatagaaaataattatttttcttataaaaaacaactaattt-attattaatttaacgaattg 21425258  T
Q  309 gtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcct 354  Q
    ||| || | | ||| ||||||| ||| ||||||||||||||||||||    
T  21425257 gtgtaccgatacacccaaatttattgggtgtaccatagaatttgcct 21425211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39089671 - 39089705
Alignment:
Q  1 atttttacaatttaacgattatgttatgaaataaa 35  Q
    |||||||||||||||||||||| ||||||||||||    
T  39089671 atttttacaatttaacgattattttatgaaataaa 39089705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 41184630 - 41184584
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaa 255  Q
    |||| ||||| |||||| |||||||| ||||||||||||||||||||    
T  41184630 cttttggtaaataagatttaattattataattgttaatgatagaaaa 41184584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 7467153 - 7467120
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||||||||| |||||||||||||||||||    
T  7467153 cactcaaatttttgggtgtaccatagaatttgcc 7467120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 11598148 - 11598111
Alignment:
Q  320 cactcaaattttt-gagtgtaccatagaatttgcctaa 356  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11598148 cactcaaattttttgagtgtaccatagaatttgcctaa 11598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 26738184 - 26738103
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaact 282  Q
    |||||| ||||| ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||    
T  26738184 cgtcgaaacttttggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaact 26738103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 33716557 - 33716630
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaact 282  Q
    |||| ||||| ||| || |||||||| || |||| ||||||||||||  ||| ||||||||| |||||||||||    
T  33716557 cttttggtaaataaaatttaattattatagttgtcaatgatagaaaataattatttttcttcaaaaaaacaact 33716630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 358
Target Start/End: Original strand, 2317131 - 2317250
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| |||| |||||| || | | ||| ||||||| |||  ||    
T  2317131 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttatgacttggtgtaccgatacacccaaatttattggatg 2317229  T
Q  338 taccatagaatttgcctaatt 358  Q
    ||||||| ||| |||||||||    
T  2317230 taccataaaatatgcctaatt 2317250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 4673975 - 4674015
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaatttt 360  Q
    |||||||||| |||  |||||||||||||||||||||||||    
T  4673975 cactcaaattgttggatgtaccatagaatttgcctaatttt 4674015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 42046108 - 42046076
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgc 352  Q
    |||||||||| ||||||||||||||||||||||    
T  42046108 cactcaaattgttgagtgtaccatagaatttgc 42046076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 208 - 356
Target Start/End: Complemental strand, 7435658 - 7435510
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7435658 actttcgataactaagatctaattattgtaatttttaatgatagaaaacaattctttttcttcgaaaaaacaactcgtttcaatataaatttgatgattt 7435559  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |||| || ||| |||||||||||||||||||||||||||||||||||||    
T  7435558 ggtgtaccggtacactcaaatttttgagtgtaccatagaatttgcctaa 7435510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 44808556 - 44808403
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||    
T  44808556 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaacccgttttaatataaatttg 44808457  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    || |||||||| || ||| || | ||||||||||||||||||||||||||||||    
T  44808456 ataatttggtgtacgggtacatttaaatttttgagtgtaccatagaatttgcct 44808403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 40054740 - 40054588
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||     
T  40054740 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaataattctttttcttcgaaaaaacaactcgtttcaatataaattta 40054641  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||| ||| || |||  ||||| |||||||| ||||||||||||||||||    
T  40054640 atgattttgtgtaccggtatactcagatttttgaatgtaccatagaatttgcc 40054588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 38207786 - 38207936
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  38207786 cgtcgacactttcggcaactaagatctaattattgtaattgttaatgatagaaaacaattctttttctttg-aaaaacaactcgtttcaatatgaatttg 38207884  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgc 352  Q
    ||||||||||| || | | |||||||||||||||| |||||||| |||||||    
T  38207885 atgatttggtgtaccgatacactcaaatttttgagcgtaccatataatttgc 38207936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 51991683 - 51991529
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| ||||||    
T  51991683 cgtcgacattttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgttttgatataaatttg 51991584  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    || |||||||| || | | |||| ||||||| |||||||||||||||||||||||    
T  51991583 ataatttggtgtacggatacacttaaattttggagtgtaccatagaatttgccta 51991529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 45650152 - 45650005
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  45650152 actttcggtaactaaaatttaattattataattgttgatgatagaaaacaattctttttcttcgaaaaaataactcgtttcaatataaatttgatgattt 45650053  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    |||| || ||| ||||||||||||| | ||||||||||||||||||||    
T  45650052 ggtgtaccggtacactcaaattttttaatgtaccatagaatttgccta 45650005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 202 - 330
Target Start/End: Original strand, 24594117 - 24594245
Alignment:
Q  202 gtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttga 301  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||| |||||||    
T  24594117 gtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaataattctttttctttgaaaaaacaactcctttcaatataaatttga 24594216  T
Q  302 tgatttggtgcactggtgcactcaaattt 330  Q
    |||||||||| || ||| |||||||||||    
T  24594217 tgatttggtgtaccggtacactcaaattt 24594245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 43916600 - 43916707
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  43916600 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacaattctttttcttcgaaaaaacaactcgttttaatatgaatttg 43916699  T
Q  301 atgatttg 308  Q
    || |||||    
T  43916700 ataatttg 43916707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 24451890 - 24451738
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||| ||| ||||||||||| ||||||||||||||||||||  |||||||||||||  ||||||| |||| |||||||| |||||     
T  24451890 cgtcgacacttttggtaaataaaatctaattattataattgttaatgatagaaaataattctttttcttcataaaaacatctcgcttcaatattaattta 24451791  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
     | ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  24451790 gtaatttggtgcaccggtacactcaaatttttgagtgtaccatagaatttgcc 24451738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 1845326 - 1845402
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaa 277  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1845326 cgtcgacactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattatttttcttcgaaaaaa 1845402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 51005045 - 51005134
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaa 290  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||  ||||||||||||    
T  51005045 cgtcgacacttttggtaaataagatctaattattgtaattgttaatgatagaaaacaattatttttcttcaaaaaaggaactcgtttcaa 51005134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 26424102 - 26424247
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaa-aacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||   |||||||||||| |||| |||||||| ||| | ||| ||||| || ||||    
T  26424102 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaattgttctttttcttcaaaaaaaacaactcatttaattattaatttaataattt 26424201  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
     ||| || ||| |||||||||| |||||| ||||||||||||||||    
T  26424202 agtgtaccggtacactcaaattgttgagtataccatagaatttgcc 26424247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 33986049 - 33985907
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    ||||| || ||| ||| |||| ||||||| |||||||||||| |||||||||||||| |||||||||||  ||| | ||| ||||| |  ||||||||||    
T  33986049 ggtaaataggatttaagtattataattgtcaatgatagaaaatgattctttttcttc-aaaaaacaactaatttaattattaatttaaatatttggtgca 33985951  T
Q  314 ctggtgcactcaaatttttgagtgtaccatagaatttgcctaat 357  Q
    |  || |||||||| |||||| ||||||||| ||||||||||||    
T  33985950 ccagtacactcaaaattttgaatgtaccataaaatttgcctaat 33985907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 12227266 - 12227121
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||| | ||||||||||||  ||| ||||| |||| |||||||||||  ||| | ||| ||||| ||| |||    
T  12227266 cttttggtaaataagatttaattattataattatcaatgatagaaaataattattttttcttcaaaaaaacaactaatttaattattaatttaatgcttt 12227167  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||| |||||| |||||||| | ||| |||||||||||||||||||    
T  12227166 ggtgtactggtacactcaaaatgttgggtgtaccatagaatttgcc 12227121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 12222620 - 12222475
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| |||||| ||||| || ||||||| || || ||||||   || ||||||||| |||||||||||| ||| | ||| || || | ||||||    
T  12222620 cttttggtaaataagatttaatttttataattgtcaacgaaagaaaatacttatttttcttcaaaaaaacaactcatttaattattaaattaaagatttg 12222521  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||| | ||||||||| ||||| | ||| |||||||||||||    
T  12222520 gtgcactgctacactcaaatatttgaatttactatagaatttgcct 12222475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 46918529 - 46918384
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttg 308  Q
    |||| ||||| |||||| ||||| || ||||| | ||||||| ||||  ||||||||||||  |||| ||||||| ||| | ||| ||||| |  |||||    
T  46918529 cttttggtaaataagatttaattgttataattatcaatgataaaaaataattctttttcttaaaaaatacaactcatttaattattaatttaacaatttg 46918430  T
Q  309 gtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||| ||  ||||| |||||||||| ||||||||||| |||||||||    
T  46918429 gtgtaccagtgcattcaaatttttaagtgtaccatataatttgcct 46918384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 358
Target Start/End: Original strand, 7426953 - 7427072
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | ||||||||| || | | ||| ||||||| ||| |||    
T  7426953 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgatttggtgtaccgatacacccaaatttattgggtg 7427051  T
Q  338 taccatagaatttgcctaatt 358  Q
    |||||||||||||||||||||    
T  7427052 taccatagaatttgcctaatt 7427072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 30547039 - 30547171
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgat-gatttggtgcactggt 318  Q
    |||||| |||||||| ||||||||||| ||| ||||  ||||||||||||  ||| |||||||| ||| |  || ||||  || ||||||||| || |||    
T  30547039 taagatttaattattataattgttaataataaaaaataattctttttcttaaaaacaacaactcatttgatcattaatt--atcgatttggtgtaccggt 30547136  T
Q  319 gcactcaaatttttgagtgtaccatagaatttgcc 353  Q
     || ||||||||||| |||||||||||||||||||    
T  30547137 acattcaaatttttgggtgtaccatagaatttgcc 30547171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 354
Target Start/End: Complemental strand, 34256578 - 34256452
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttct-tcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactca 325  Q
    |||||||||||||| | |||||||||||||   |||||||||  ||  |||| ||||||||| | ||| ||||| || |||||||| || | | ||||||    
T  34256578 taattattgtaattatcaatgatagaaaacagctctttttctaacg--aaaataactcgtttaattattaatttaataatttggtgtaccgatacactca 34256481  T
Q  326 aatttttgagtgtaccatagaatttgcct 354  Q
    |||| ||| ||||||||||||||||||||    
T  34256480 aattgttgggtgtaccatagaatttgcct 34256452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 44978950 - 44978869
Alignment:
Q  272 aaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||| ||||||||| | ||| ||||| || |||||||| || ||| |||||||||| ||| |||||||||||||||||||    
T  44978950 aaaaaaaaactcgtttaattattaatttaataatttggtgtaccggtacactcaaattgttgggtgtaccatagaatttgcc 44978869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 353
Target Start/End: Original strand, 49982717 - 49982862
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattc-tttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| |||||| |||||||| ||||||| ||||||||||||  | || ||||||||| |||||||||||  ||| | |||  |||| ||| |||    
T  49982717 cttttggtaaataagatttaattattataattgtcaatgatagaaaataaatcttttttcttcaaaaaaacaactaatttaattattgatttaatgtttt 49982816  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||| |||| | |||||||| | ||| || ||||||| ||||||||    
T  49982817 ggtgtactgatacactcaaaatgttgggtataccataaaatttgcc 49982862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 45318208 - 45318096
Alignment:
Q  220 taagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtg 319  Q
    |||||| |||||||| ||||||| ||||| | ||||  |||||||||||||||||||||||||| | | |  || ||||| |  |||||||| || |||     
T  45318208 taagatttaattattataattgtcaatgacataaaataattctttttcttcgaaaaaacaactcatataatcattaatttaacaatttggtgtaccggtt 45318109  T
Q  320 cactcaaattttt 332  Q
    |||||||||||||    
T  45318108 cactcaaattttt 45318096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 51161249 - 51161169
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    ||||||||||||||| |||||||||||||  |||| |||      |||||||||||||||||||||| |||||||||||||    
T  51161249 taattattgtaattgataatgatagaaaataattcatttaaaaaaaaaaaacaactcgtttcaatattaatttgatgattt 51161169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 10061271 - 10061157
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| | || |||||| |||| | ||| ||||||| |||| ||    
T  10061271 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttacgacttggtgtactgatacacccaaatttattgaatg 10061173  T
Q  338 taccatagaatttgcc 353  Q
    ||||||||||||||||    
T  10061172 taccatagaatttgcc 10061157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 14077473 - 14077327
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattcttttt-cttcgaaaaaacaactcgtttcaatatgaatttgatgattt 307  Q
    |||| ||||| ||| || |||||||| ||||||| ||||||||||||  ||| ||||| |||| |||||||||||  ||| | ||| ||||| ||| |||    
T  14077473 cttttggtaaataaaatttaattattataattgtcaatgatagaaaataattattttttcttc-aaaaaacaactaatttaattattaatttaatgcttt 14077375  T
Q  308 ggtgcactggtgcactcaaatttttgagtgtaccatagaatttgccta 355  Q
    |||| || ||| |||||||| | |||  |||||| |||||||||||||    
T  14077374 ggtgtaccggtacactcaaaatgttggatgtaccgtagaatttgccta 14077327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 25493650 - 25493496
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| |||||     
T  25493650 cgtcgaaacttttggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttt 25493552  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgccta 355  Q
    | ||||||||| ||   | ||| ||||||| |||  ||||||||||||||||||||    
T  25493551 acgatttggtgtaccaatacacccaaatttattggatgtaccatagaatttgccta 25493496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 43224938 - 43225052
Alignment:
Q  239 ttgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtg 337  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| ||||| |||| |||||| || | | ||| ||||||| ||| |||    
T  43224938 ttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaattttatgacttggtgtaccgatacacccaaatttattgggtg 43225036  T
Q  338 taccatagaatttgcc 353  Q
    ||||||||||||||||    
T  43225037 taccatagaatttgcc 43225052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 633021 - 633054
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||||||||||||||||||||||||||    
T  633021 cactcaaatttttgagtgtaccatagaatttgcc 633054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 45317985 - 45317928
Alignment:
Q  304 atttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaattttt 361  Q
    |||||||| || ||| || ||||||| |||||||||||||||| ||||||||||||||    
T  45317985 atttggtgtaccggtacattcaaattattgagtgtaccatagattttgcctaattttt 45317928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 48616820 - 48616853
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    ||||||||||||||||||||||||||||||||||    
T  48616820 cactcaaatttttgagtgtaccatagaatttgcc 48616853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 44979033 - 44978973
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttctt 269  Q
    |||| ||||| || ||| |||||||||||||||| |||||||||||||  |||||||||||    
T  44979033 cttttggtaaatacgatttaattattgtaattgtcaatgatagaaaacagttctttttctt 44978973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 351
Target Start/End: Complemental strand, 17376507 - 17376357
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| |||||     
T  17376507 cgtcgaaacttttggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttt 17376409  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttg 351  Q
    | || |||||| || | | ||| ||||||| |||  ||||||||||||||||    
T  17376408 acgacttggtgtaccgatacacccaaatttattggatgtaccatagaatttg 17376357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 354
Target Start/End: Complemental strand, 46368639 - 46368513
Alignment:
Q  227 taattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaa 326  Q
    ||||| |||||||||| ||||||||||||   || ||||||||| |||||||||||| ||| | ||| ||||| || |||| ||| |  ||| || ||||    
T  46368639 taattgttgtaattgtcaatgatagaaaatagttttttttcttc-aaaaaacaactcatttaattattaatttaataatttagtggatcggtacattcaa 46368541  T
Q  327 atttttgagtgtaccatagaatttgcct 354  Q
    ||| | || ||||||||| |||||||||    
T  46368540 attatcgaatgtaccataaaatttgcct 46368513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 4155823 - 4155789
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||| |||||||||||||||||||||||||    
T  4155823 cactcaaatatttgagtgtaccatagaatttgcct 4155789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 7435863 - 7435829
Alignment:
Q  4 tttacaatttaacgattatgttatgaaataaaaag 38  Q
    ||||||||||||||||||| |||||||||||||||    
T  7435863 tttacaatttaacgattattttatgaaataaaaag 7435829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 361
Target Start/End: Original strand, 14153067 - 14153097
Alignment:
Q  331 ttgagtgtaccatagaatttgcctaattttt 361  Q
    |||||||||||||||||||||||||||||||    
T  14153067 ttgagtgtaccatagaatttgcctaattttt 14153097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 14191042 - 14190889
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| |||||     
T  14191042 cgtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttt 14190944  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcct 354  Q
    | || |||||| || | | ||| ||||||| ||| |||||||||| |||||||||    
T  14190943 acgacttggtgtaccgatacacccaaatttattgggtgtaccataaaatttgcct 14190889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 23540233 - 23540287
Alignment:
Q  229 attattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||||| ||||||| ||| ||||||||| ||| ||||||||| ||||||||||||    
T  23540233 attattataattgtcaataatagaaaacaattatttttcttcaaaaaaacaactc 23540287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 28791637 - 28791777
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgca 313  Q
    ||||| |||||| |||||||| |||||||   ||||||||||| ||| ||| ||||| |||||| ||| | ||| | ||| |||||| ||| |||||| |    
T  28791637 ggtaaataagatttaattattataattgtaggtgatagaaaacaatt-tttctcttc-aaaaaataacacatttaactattaatttgttgacttggtgta 28791734  T
Q  314 ctggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    |   | ||| |||||||||||||||||| || |||||||||||    
T  28791735 ccaatacacccaaatttttgagtgtaccgtaaaatttgcctaa 28791777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 48868326 - 48868400
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactc 283  Q
    |||| ||||| ||| || |||||||  || |||||||||||||||||  ||| ||||||||| ||||||||||||    
T  48868326 cttttggtaaataaaatttaattatcttagttgttaatgatagaaaataattatttttcttcaaaaaaacaactc 48868400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 33234317 - 33234390
Alignment:
Q  209 ctttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaact 282  Q
    |||| ||||| ||| || |||||||| || |||| ||||||||||||  ||| ||||||||| |||||||||||    
T  33234317 cttttggtaaataaaatttaattattatagttgtcaatgatagaaaataattatttttcttcaaaaaaacaact 33234390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 48481002 - 48480921
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaact 282  Q
    |||||| ||||| ||||| ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||    
T  48481002 cgtcgaaacttttggtaaataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaact 48480921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 51369362 - 51369329
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcc 353  Q
    |||||||||| |||||||||||||||||||||||    
T  51369362 cactcaaattgttgagtgtaccatagaatttgcc 51369329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 31075925 - 31076017
Alignment:
Q  262 tttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcc 353  Q
    ||||||||| |||||| ||||| ||| | ||| ||||| |||| | |||| || ||| ||||||||| | ||| |||||||||||||||||||    
T  31075925 tttttcttcaaaaaaataactcatttaattattaatttaatgaatgggtgtaccggtacactcaaatatattgggtgtaccatagaatttgcc 31076017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 47601728 - 47601668
Alignment:
Q  272 aaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaattttt 332  Q
    |||||||||||  ||| | ||||||||| ||||||||||| || ||| |||||||||||||    
T  47601728 aaaaaacaacttatttaattatgaatttaatgatttggtgtaccggtacactcaaattttt 47601668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1844 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold1844
Description:

Target: scaffold1844; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 1267 - 1115
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  1267 cgtcgacactttcgataactaagatctaattattataattgttaatgatagaaaacaattctttttcttcgaaaaa-caacccgtttcaatatgaatttg 1169  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcct 354  Q
    ||||||||||| || ||| ||||||||||||| |||||||||||||||||||||    
T  1168 atgatttggtgtaccggtacactcaaatttttaagtgtaccatagaatttgcct 1115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 201 - 352
Target Start/End: Complemental strand, 214291 - 214141
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  214291 cgtcgacactttcgataactaagatataattattgtaattgttaatgatagaaaacaattttttttcttcgaaaaat-aactcgtttcaatatgaatttg 214193  T
Q  301 atgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgc 352  Q
    ||||||| ||| ||  || |||||||||||||||||||||||||||||||||    
T  214192 atgattttgtgtaccagtacactcaaatttttgagtgtaccatagaatttgc 214141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 6840 - 6997
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttctt-cgaaaaaacaa-ctcgtttcaatatgaatt 298  Q
    |||||||||||| | ||| ||||||||| ||||||||||||||||||||||||| | ||  |||||||| | ||||||||| ||||||||||||| || |    
T  6840 cgtcgatacttttgttaaataagatctagttattgtaattgttaatgatagaaatcaataatttttctttcaaaaaaacaaactcgtttcaatattaaat 6939  T
Q  299 tgatgatttggtgcactggtgcactcaaatttttgagtgtaccatagaatttgcctaa 356  Q
    | ||||||||||| || |||||||||||||| |||| |||||||||||||||||||||    
T  6940 taatgatttggtgtaccggtgcactcaaattcttgaatgtaccatagaatttgcctaa 6997  T

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Target: scaffold0045 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 208 - 362
Target Start/End: Complemental strand, 38126 - 37964
Alignment:
Q  208 actttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttc-gaaaaaacaactcgtttcaatatgaatttgatgatt 306  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||  |||||||||| ||||||||||| ||||||||||||    
T  38126 actttcagtaactaagatctaattattgtaattgtaaatgatagaaaacaattcgttttcttctaaaaaaacaacccgtttcaatataaatttgatgatt 38027  T
Q  307 tggtgcactggtgcac-------tcaaatttttgagtgtaccatagaatttgcctaattttta 362  Q
    ||||| || | | |||       |||||||||||| ||||||||||||||||||  |||||||    
T  38026 tggtgtaccgatacactcaaatttcaaatttttgaatgtaccatagaatttgccatattttta 37964  T

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Target: scaffold0072 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 47858 - 47982
Alignment:
Q  229 attattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttgatgatttggtgcactggtgcactcaaat 328  Q
    |||||| ||||||| ||||||| ||||  ||| ||||||  | |||||||||||| ||| | | ||||||| | ||||||||| || ||| |||||||||    
T  47858 attattataattgtcaatgataaaaaataattatttttcaac-aaaaaacaactcatttaattgtgaatttaacgatttggtgtaccggtacactcaaat 47956  T
Q  329 ttttgagtgtaccatagaatttgcct 354  Q
    |||| |||||||||||||||||||||    
T  47957 ttttaagtgtaccatagaatttgcct 47982  T

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Target: scaffold0841 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 3322 - 3395
Alignment:
Q  214 ggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgttt 287  Q
    ||||| || ||| |||||||| ||||||| |||||||||||||  |||||||||||| ||||||||||||||||    
T  3322 ggtaaatacgatttaattattataattgtcaatgatagaaaacagttctttttcttcaaaaaaacaactcgttt 3395  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 36982 - 37021
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcctaattt 359  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  36982 cactcaaattgttgagtgtaccatagaatttgcctaattt 37021  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 354
Target Start/End: Original strand, 166672 - 166825
Alignment:
Q  201 cgtcgatactttcggtaactaagatctaattattgtaattgttaatgatagaaaacgattctttttcttcgaaaaaacaactcgtttcaatatgaatttg 300  Q
    |||||| ||||| ||||  ||| || |||||||  || |||| ||||||||||||  ||| ||||||||| |||||||||||| ||| | ||| |||||     
T  166672 cgtcgaaacttttggtatataaaatttaattatcttagttgtcaatgatagaaaataattatttttcttcaaaaaaacaactcattt-attattaatttt 166770  T
Q  301 atgatttggtgcactggtgcactcaaattt-ttgagtgtaccatagaatttgcct 354  Q
    | || |||||| || | | ||| ||||||| |||| |||||||||||||||||||    
T  166771 acgacttggtgtaccgatacacccaaatttattgaatgtaccatagaatttgcct 166825  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 404718 - 404684
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttgcct 354  Q
    |||||||||||||||||||||||||||||||||||    
T  404718 cactcaaatttttgagtgtaccatagaatttgcct 404684  T

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Target: scaffold0604 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 351
Target Start/End: Complemental strand, 2053 - 2022
Alignment:
Q  320 cactcaaatttttgagtgtaccatagaatttg 351  Q
    ||||||||||||||||||||||||||||||||    
T  2053 cactcaaatttttgagtgtaccatagaatttg 2022  T

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