View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14154_low_11 (Length: 260)

Name: NF14154_low_11
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14154_low_11
NF14154_low_11
[»] chr3 (2 HSPs)
chr3 (17-212)||(28145902-28146103)
chr3 (17-184)||(45134996-45135164)
[»] chr6 (2 HSPs)
chr6 (34-158)||(8636396-8636521)
chr6 (28-116)||(10200790-10200879)
[»] chr5 (1 HSPs)
chr5 (34-158)||(9840743-9840869)
[»] chr2 (1 HSPs)
chr2 (34-155)||(21987457-21987579)
[»] chr1 (1 HSPs)
chr1 (85-160)||(51287661-51287738)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 28146103 - 28145902
Alignment:
Q  17 atgggattcctatggattttgatggatttttcagt-----gattttttagctttaaaa-gtctttaccaacatcatgagatttctgtggattcttatttc 110  Q
    |||||||| ||||||||||||||||| |||| | |     |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||     
T  28146103 atgggatttctatggattttgatggacttttaattttagggattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcatttt 28146004  T
Q  111 tt-atttcttttatgtttttacatctcccttctctactttccctttctctcatgtccttgtatcaaatatgttttcttatgtagcttcatcccttccatt 209  Q
    || ||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28146003 tttatttcttttttgtttttacatctcccttatctccttcccctttctctcatgtccttctatcaaatatgtttt-ttatgtagcttcatcccttccatt 28145905  T
Q  210 ttc 212  Q
    |||    
T  28145904 ttc 28145902  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 45134996 - 45135164
Alignment:
Q  17 atgggattcctatggattttgatggatttttcagtgattttttagctttaaaa-gtctttaccaacatcatgagatttctgtggattcttatttcttatt 115  Q
    |||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||| |||||| |||||| | |||| |||||    
T  45134996 atgggatttctatggattttgatggacttttcagtaattttttaactttaaaaagtctttaccaacatcatgaaatttctatggattttcattttttatt 45135095  T
Q  116 tcttttatgtttttacatctcccttctctactttccctttctctcatgtccttgtatcaaatatgtttt 184  Q
    || ||| |||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||    
T  45135096 tcatttttgtttttacatctcccttatctccttcccctttctctcatgtccttctatcaaatatgtttt 45135164  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 8636521 - 8636396
Alignment:
Q  34 tttgatggatttttcagtgattttttagctttaaaa-gtctttaccaacatcatgagatttctgtggattcttatttcttatttcttttatgtttttaca 132  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||    
T  8636521 tttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattttttatttcttttatatttttaca 8636422  T
Q  133 tctcccttctctactttccctttctc 158  Q
    |||||||| ||| ||| |||||||||    
T  8636421 tctcccttatctccttcccctttctc 8636396  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 10200879 - 10200790
Alignment:
Q  28 atggattttgatggatttttcagtgattttttagctttaaaa-gtctttaccaacatcatgagatttctgtggattcttatttcttattt 116  Q
    ||||||||||||| |  ||| |||||||||||| |||||||| |||||| |  |||||||||||||||  |||||||| |||||| ||||    
T  10200879 atggattttgatgaaaattttagtgattttttacctttaaaaagtctttcctcacatcatgagatttcaatggattctcatttctcattt 10200790  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 9840869 - 9840743
Alignment:
Q  34 tttgatggatttttcagtgattttttagctttaaaa-gtctttaccaacatcatgagatttctgtggattctta-tttcttatttcttttatgtttttac 131  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| |||||||||||||  ||||||    
T  9840869 tttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcatttttttatttcttttataattttac 9840770  T
Q  132 atctcccttctctactttccctttctc 158  Q
    ||||||||| ||| ||||||| |||||    
T  9840769 atctcccttatcttctttcccattctc 9840743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 21987457 - 21987579
Alignment:
Q  34 tttgatggatttttcagtgattttttagctttaaaa-gtctttaccaacatcatgagatttctgtggattcttatttcttatttcttttatgtttttaca 132  Q
    ||||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||    
T  21987457 tttgatgaacttttcagggattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattttttatttcttttatatttttaca 21987556  T
Q  133 tctcccttctctactttcccttt 155  Q
    ||  |||| ||| ||| ||||||    
T  21987557 tcgaccttatctccttccccttt 21987579  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 51287661 - 51287738
Alignment:
Q  85 atgagatttctgtggattcttatt-tcttatttcttttatgtttttacatctcccttctctactttc-cctttctctc 160  Q
    ||||||||||| |||||||| ||  |||||||||||||||| |||||||||||  |||||| ||| | ||||||||||    
T  51287661 atgagatttctatggattctcataatcttatttcttttatgcttttacatctcttttctctccttcctcctttctctc 51287738  T

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