View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14154_low_20 (Length: 209)
Name: NF14154_low_20
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 13995594 - 13995756
Alignment:
| Q |
32 |
ggtgacttgtctgagccaggtgaccgtagaattctacaaatagaagttaatattgtcaaatctaagagcaagccaaagatacttaacgaacgaacaataa |
131 |
Q |
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| T |
13995594 |
ggtgccttgtttgagccagatgaccgtagaattctacaaatagaagttaatattgtcaaatccgagagcaagccaaagatgcttaacgaacgaacaataa |
13995693 |
T |
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| Q |
132 |
cagtgcatgctactttcaccattattgaggcaccactgtcagttgttagtgtctatcatacct |
194 |
Q |
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| T |
13995694 |
cagtgcatgctactttcaccactattgaggcaccactgacagttgttagtgtctagcatacct |
13995756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 3155001 - 3154869
Alignment:
| Q |
39 |
tgtctgagccaggtgaccgtagaattctacaaatagaagttaatattgtcaaatctaagagcaagccaaagatacttaacgaacgaacaat------aac |
132 |
Q |
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| T |
3155001 |
tgtctgagctaggtgaccatagaattcaccaaatagaagttaatattgtcaaatctgagtgcatgcctaaaattcttaacaaacgaacaatcccaaaaac |
3154902 |
T |
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| Q |
133 |
agtgcatgctactttcaccattattgaggcacc |
165 |
Q |
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| T |
3154901 |
ggtgcatgatactttcaccactattgaggcacc |
3154869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 22911671 - 22911834
Alignment:
| Q |
37 |
cttgtctgagccaggtgaccgtagaattctacaaatagaagttaatattgtcaaatctaagagcaagccaaagatacttaacgaacgaaca------ata |
130 |
Q |
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| T |
22911671 |
cttgtctgagccaagtgaccagagaattccccaactagaagttaatattgtcaaatccaagagcaagccaaagatgcttaacaaacggacagtctcgaag |
22911770 |
T |
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| Q |
131 |
acagtgcatgctactttcaccattattgaggcaccactgtcagttgttagtgtctatcatacct |
194 |
Q |
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| T |
22911771 |
acagtgcaagatactttcactactattaaggcacctcgggcagttattagtgtctagcatacct |
22911834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 30407211 - 30407374
Alignment:
| Q |
37 |
cttgtctgagccaggtgaccgtagaattctacaaatagaagttaatattgtcaaatctaagagcaagccaaagatacttaacgaacgaacaat------a |
130 |
Q |
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| T |
30407211 |
cttgtctgagccaagtggccagagagttccccaagtagaagttaatattgtcaaatccaagagcaagccaaagatgcttaacaaatggacaatctcgaaa |
30407310 |
T |
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| Q |
131 |
acagtgcatgctactttcaccattattgaggcaccactgtcagttgttagtgtctatcatacct |
194 |
Q |
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| T |
30407311 |
acagtgcatgatactttcactactattgaggcacctcgggcagttattagtgtctagcatacct |
30407374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 53244939 - 53245003
Alignment:
| Q |
130 |
aacagtgcatgctactttcaccattattgaggcaccactgtcagttgttagtgtctatcatacct |
194 |
Q |
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| T |
53244939 |
aacagtgcatgatactttcaccactattgaggcacctcagacagttattagtgtctagcatacct |
53245003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 10626384 - 10626229
Alignment:
| Q |
45 |
agccaggtgaccgtagaattctacaaatagaagttaatattgtcaaatctaagagcaagccaaagatacttaacgaacgaacaat------aacagtgca |
138 |
Q |
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| T |
10626384 |
agccaagtgactatagaattctccaaatagaagttaatattgtcaaatccgagagcaagccaaagatgcttaacaaatagacaatcctgaaaaaagtgca |
10626285 |
T |
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| Q |
139 |
tgctactttcaccattattgaggcaccactgtcagttgttagtgtctatcatacct |
194 |
Q |
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| | ||||||||| |||||||||||| | | ||||| |||||||||| ||||||| |
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| T |
10626284 |
ggatgctttcaccactattgaggcacctcagacagttattagtgtctagcatacct |
10626229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 34596388 - 34596225
Alignment:
| Q |
37 |
cttgtctgagccaggtgaccgtagaattctacaaatagaagttaatattgtcaaatctaagagcaagccaaagatacttaacgaacgaaca------ata |
130 |
Q |
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| T |
34596388 |
cttgtctgagccaagtgaccagagaattccccaagtagaagttaatattgtcaaatccaagagcaaaccaaagatgcttaacaaacggacagtctcgaag |
34596289 |
T |
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| Q |
131 |
acagtgcatgctactttcaccattattgaggcaccactgtcagttgttagtgtctatcatacct |
194 |
Q |
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||| |||||| ||||||||| | ||||||| |||| | | ||||| |||||||||| ||||||| |
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| T |
34596288 |
acaatgcatgatactttcactactattgagacacctcgggcagttattagtgtctagcatacct |
34596225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 15402967 - 15403028
Alignment:
| Q |
68 |
caaatagaagttaatattgtcaaatctaagagcaagccaaagatacttaacgaacgaacaat |
129 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||| |||||| ||| |||||| |
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| T |
15402967 |
caaatagtagttaatattgtcaaatccgagagcaagccaaagatgcttaacaaacaaacaat |
15403028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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