View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14154_low_21 (Length: 204)
Name: NF14154_low_21
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_low_21 |
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| [»] scaffold0017 (2 HSPs) |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 44612202 - 44612367
Alignment:
| Q |
17 |
tactcagttccaattccaatattagaatcaacaaccaaattgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44612202 |
tactcagttccaattccaatattagaatcaacaaccaaattgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatct |
44612301 |
T |
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| Q |
117 |
caacgattcttctcatcacaccttgcaattcctaatgaagcttccaagccttgaagagttgcatct |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44612302 |
caacgattcttctcatcacaccttgcaattcctaatgaagcttccaagccttgaagagttgcatct |
44612367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 44145044 - 44145170
Alignment:
| Q |
56 |
ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattcttctcatcacaccttgcaattcctaatgaa |
155 |
Q |
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|||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||| ||||||| |
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| T |
44145044 |
ttgagtggctgtcaaatctctcttttctgagaattcttgacttgagtggaattcaaaatctcaaggattcttctcatgacacctttcaattcataatgaa |
44145143 |
T |
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| Q |
156 |
gcttccaagccttgaagagttgcatct |
182 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
44145144 |
gcttccaagccttgaagggttgcatct |
44145170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 16817769 - 16817893
Alignment:
| Q |
56 |
ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattcttctcatcacaccttgcaattcctaatgaa |
155 |
Q |
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|||||||||||||||||||||| ||| | |||| | ||||||||||| ||||||||| ||||||||||| ||||||||| | ||||||||||| |||| |
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| T |
16817769 |
ttgagtggctatcaaatctctcctctttaagaaatattgacttgagttatgttcaaagtctcaacgatttttctcatcatgcactgcaattcctagtgaa |
16817868 |
T |
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| Q |
156 |
gcttccaagccttgaagagttgcat |
180 |
Q |
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|||||||||||||||||| |||||| |
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| T |
16817869 |
gcttccaagccttgaagaattgcat |
16817893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 174008 - 174152
Alignment:
| Q |
19 |
ctcagttccaattccaatattagaatcaacaaccaaattgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctca |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||| | ||||||| ||||| |
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| T |
174008 |
ctcagttccaattccaatcttagaatcaacaaccaaattgtgtggctaacaaatctctcttctttgaggattcttgacttgagcggagttcaaattctca |
174107 |
T |
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| Q |
119 |
acgattcttctcatcacaccttgcaattcctaatgaagcttccaa |
163 |
Q |
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||||||||||||| || ||||||||||| ||||||||| |||||| |
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| T |
174108 |
acgattcttctcaacagaccttgcaatttctaatgaagtttccaa |
174152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 169048 - 169174
Alignment:
| Q |
56 |
ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattcttctcatcacaccttgcaattcctaatgaa |
155 |
Q |
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|
|||||||||||||||| ||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
169048 |
ttgagtggctatcaaagctctcatctttgagaaaaattgacttgagtacaattcaaaatctcaacgattcttctcatcacaccttgcaattcataatgaa |
169147 |
T |
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| Q |
156 |
gcttccaagccttgaagagttgcatct |
182 |
Q |
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||||||||||||| |||||||| |||| |
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| T |
169148 |
gcttccaagccttaaagagttgtatct |
169174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 29744 - 29618
Alignment:
| Q |
56 |
ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattcttctcatcacaccttgcaattcctaatgaa |
155 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29744 |
ttgagtggctatcaaagctctcatctttgagaaaaattgacttgagtacaattcaaaatctcaacgattcttctcatcacaccttgcaattcataatgaa |
29645 |
T |
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| Q |
156 |
gcttccaagccttgaagagttgcatct |
182 |
Q |
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||||||||||||| |||||||| |||| |
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| T |
29644 |
gcttccaagccttaaagagttgtatct |
29618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 8342126 - 8342253
Alignment:
| Q |
57 |
tgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattcttctcatcacaccttgcaattcctaatgaag |
156 |
Q |
| |
|
|||||||||||||| |||||||||| ||| || ||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |||| |
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| T |
8342126 |
tgagtggctatcaagtctctcttctttgaaaagacttagcttgagttttgttcaaaatctcaatgattcttctcatcacaccctgcaattcctagggaag |
8342225 |
T |
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| Q |
157 |
cttccaagccttgaagagttgcatctta |
184 |
Q |
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||| |||||||||||||||| |||||| |
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| T |
8342226 |
cttaaaagccttgaagagttgtatctta |
8342253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 26727793 - 26727908
Alignment:
| Q |
56 |
ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattcttctcatcacaccttgcaattcctaatgaa |
155 |
Q |
| |
|
|||| ||||||||||| ||| |||| |||||| ||||||||| | |||||| || | ||||| ||| |||| |||||||| | ||||| || |||| |
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| T |
26727793 |
ttgaatggctatcaaacctcccttcattgagaaaaattgacttgactaatgttctaattgtcaactatttttcttatcacaccctacaatttttattgaa |
26727892 |
T |
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| Q |
156 |
gcttccaagccttgaa |
171 |
Q |
| |
|
|||||||||||||||| |
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| T |
26727893 |
gcttccaagccttgaa |
26727908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 29228477 - 29228407
Alignment:
| Q |
56 |
ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattct |
126 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||| |||| ||||||||||||||||| |||||| |
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| T |
29228477 |
ttgagtggctataaaatctctcttctttgagaaatcttgacctgagcgatgttcaaaatctcaaagattct |
29228407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 29341776 - 29341706
Alignment:
| Q |
56 |
ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgttcaaaatctcaacgattct |
126 |
Q |
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|
|||||||||||| ||||||||||||| |||||| ||||||| |||| ||||||||||||||||| |||||| |
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| T |
29341776 |
ttgagtggctataaaatctctcttctttgagaaatcttgacctgagcgatgttcaaaatctcaaagattct |
29341706 |
T |
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