View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14154_low_3 (Length: 445)
Name: NF14154_low_3
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Complemental strand, 55654633 - 55654218
Alignment:
| Q |
13 |
aatatgatgatggtagagttggcaacatcactttacttagaaaaacaatctaggttcaattcatggagtcgcacatttggaagatatagtattagcgatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
55654633 |
aatatgatgatggtagagttggcaacatcactttacttagaaaaacaatctaggttcaattcatggagtcgcacatttggaagatatagtctaa-cgatc |
55654535 |
T |
|
| Q |
113 |
gttaactcaaaaattaatcttatagcggattcaaattggtcaatatatacaagagtgtgtttgatatttttcacacatcataaaaatttgaagatgatag |
212 |
Q |
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| T |
55654534 |
gttaacttaaaaattaatcttatagtggatttaaattggtcaatatatacgagagtgtgtttgatatttttcacacatcataaaaaatttaagatgatag |
55654435 |
T |
|
| Q |
213 |
aaggggaaatcagcaacttcataatggtatggagtgtagcaacgatattattttgctacagctacacaatagggaagttgattcccaaaggtaaggtaag |
312 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55654434 |
aaggagaaatcaacaacttcataatggtatggagtgtagcaacaatattattttgctacagctacacaatagggaagttgattcccaaaggtaaggtaag |
55654335 |
T |
|
| Q |
313 |
acttgtaaccctaattccacccataataatcctcctccttctccctatgagactcaccatcgtccatcttgtaggcccttcttcattcctcctttcttgg |
412 |
Q |
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| T |
55654334 |
atttgtaaccctaattccacccataataatcctcctccttctccctatgagactcaccatcgtccatcttgtaggcccttcttcattcctcctttcttgg |
55654235 |
T |
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| Q |
413 |
ctttccaccttcaaact |
429 |
Q |
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| T |
55654234 |
ctttccaccttcaaact |
55654218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 429
Target Start/End: Complemental strand, 4477634 - 4477423
Alignment:
| Q |
218 |
gaaatcagcaacttcataatggtatggagtgtagcaacgatattattttgctacagctacacaatagggaagttgattcccaaaggtaaggtaagacttg |
317 |
Q |
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||||||| ||||||||| ||||| |||| ||||| || | ||| ||||| || ||||||| ||| |||||| | ||||||||||| | | |||||| |
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| T |
4477634 |
gaaatcaacaacttcatcatggtttggaccgtagccacaacattgttttggtatagctacagaattgggaaggtaattcccaaaggcagaaaacgacttg |
4477535 |
T |
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| Q |
318 |
taaccctaattccacccataataatcctcctccttctccctatgagactcaccatcgtccatcttgtaggcccttcttcattcctcctttcttggctttc |
417 |
Q |
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|| |||| ||||||||||| | ||||| |||||||||||| | || |||||| |||||||||| | || |||||||||| ||||| |||||||||| |
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| T |
4477534 |
tatccctttttccacccatactcatccttctccttctccctgtaaggctcacctctgtccatcttggaagcatttcttcattcttccttgcttggctttc |
4477435 |
T |
|
| Q |
418 |
caccttcaaact |
429 |
Q |
| |
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| | |||||||| |
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| T |
4477434 |
cgctttcaaact |
4477423 |
T |
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