View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14154_low_6 (Length: 372)
Name: NF14154_low_6
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_low_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 372
Target Start/End: Complemental strand, 25063753 - 25063386
Alignment:
| Q |
5 |
ctcctcaacttatgccaagactctgcaatcggcttattaacaacatcaccagcaacagattcttcctctcccaatttatcttcctttctcttctgtacta |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25063753 |
ctcctcaacttctgccaagactctgcaatcggcttattaacaacatcaccagcaacagattcttcctctcccaatttatcttcctttctcttctgtacta |
25063654 |
T |
|
| Q |
105 |
atcccaacttattccacaacttgccccatttgtgcaacttgttcgttcccttttgatcatttccaatttcaacgtcacaagcttccttagaagcagaccc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
25063653 |
atcccaacttattccacaacttgccccatttgtgaaacttgtttgttcccttttgatcatttccaatttcaacatcacaagcttccttagaagcagatcc |
25063554 |
T |
|
| Q |
205 |
tgttctacaatcagattgaacattaacactattcttaggtttcaaattggcacccctcaaatcttcctcggtgatcaaaacctttgccccgtagaataac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
25063553 |
tgttctacaatcagattgaacattaacactattcttaggtttcaaattagcatccctcaaatcttcctcagtgatcaaaacctttgcaccgtagaataac |
25063454 |
T |
|
| Q |
305 |
tcagttgtagctggagaacccttggcattagatatcactctcacttcatcaacatctccgatcaccgc |
372 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
25063453 |
tcagttgtagctggagaaaccttggcattagatatcactctcaattcatcaacatctccaatcaccgc |
25063386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University