View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14154_low_8 (Length: 297)
Name: NF14154_low_8
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 38150537 - 38150800
Alignment:
| Q |
19 |
cttattgttagaatgatggatcaagttttcaatatcacaagttaaataagtttagtgttacttattagcaactgaagaataaagattctatcacaaatat |
118 |
Q |
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| T |
38150537 |
cttattgttagaatgatggatcaagttttcaatatcacaagttaaataagtttagtgttacttattagcaactgaagaataaagattgtatcacaaatat |
38150636 |
T |
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| Q |
119 |
ttctgttcaatattgtgcact---aagagtggggtagtgcagatttatgataatgggctattttttatataaataatcgaaatgttcctcctttgttcta |
215 |
Q |
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| T |
38150637 |
ttctgttcaatattgtgcactaagaagagtgggatagtgcag----------atgtgctattttttatataaataatcggaatgttcctcctttattcta |
38150726 |
T |
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| Q |
216 |
gttggagacaaactcaatttaaaactttattttaggaaaaccacttgttcattaggagtgctatgacctatgct |
289 |
Q |
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| T |
38150727 |
gttggagacaaactcaatttaaaactttattttaggaaaaccacttgttcattaggagtgctatgacctatgct |
38150800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 24632073 - 24632129
Alignment:
| Q |
195 |
aaatgttcctcctttgttctagttggagacaaactcaatttaaaactttattttagg |
251 |
Q |
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| T |
24632073 |
aaatgttactcctttattctagttggtgacaaactcaatttaaaactttattttagg |
24632129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 24632590 - 24632642
Alignment:
| Q |
199 |
gttcctcctttgttctagttggagacaaactcaatttaaaactttattttagg |
251 |
Q |
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| T |
24632590 |
gttcctcctttattctagttggagacgaactcaatttaaaactttattttagg |
24632642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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