View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14154_low_9 (Length: 274)
Name: NF14154_low_9
Description: NF14154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14154_low_9 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 2672383 - 2672630
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2672383 |
tcatcaaccgtatcatcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctca |
2672482 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||| ||||||||||| |
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|
| T |
2672483 |
atgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatgattgtcgattt |
2672582 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattttcctgcatcaat |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2672583 |
tccagaaccactttcccctaccaaagccgttgattttcctgcatcaat |
2672630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 2596567 - 2596814
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||||| |||| |||||||| | |
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|
| T |
2596567 |
tcatcaactttatcatcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttcctta |
2596666 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
2596667 |
atgatcgtagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctataattgtcgattt |
2596766 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattttcctgcatcaat |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2596767 |
tccagaaccactttcccctaccaaagccgtcgattttcctgcatcaat |
2596814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 2569008 - 2569255
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| | |
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|
| T |
2569008 |
tcatcaaccttatcatcgtaagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgttccctta |
2569107 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||| ||||| |
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|
| T |
2569108 |
atgaccttagattatatgtctttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcctatgattgttgattt |
2569207 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattttcctgcatcaat |
259 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2569208 |
tccagaaccactttcccctaccaaagctgtcgattttccagcatcaat |
2569255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 2440316 - 2440069
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||| |||||||||| || ||||||||||||||||||||||||||| |||| |||||||| | |
|
|
| T |
2440316 |
tcatcaactttatcatcatatgctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttcctta |
2440217 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
|||||| |||||||| || |||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
2440216 |
atgatcgtagattataagtttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatgattgtcgattt |
2440117 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattttcctgcatcaat |
259 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| || ||||| |
|
|
| T |
2440116 |
tccagaaccactttccccaaccaaagccgttgattttccggcgtcaat |
2440069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 2641223 - 2641461
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
2641223 |
tcatcaactttatcatcataggctccgtatgcaatattttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatgtgtttcctta |
2641322 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
| || || |||||||| | |||||| ||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||| ||||| |
|
|
| T |
2641323 |
acgaccttagattataagactttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcctatgattgttgattt |
2641422 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattttcc |
250 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
2641423 |
ccctgaaccactttccccgaccaaagccgtcgattttcc |
2641461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 2592262 - 2592015
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
2592262 |
tcatcaaccttatcatcatatgatccatatgcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtttcctta |
2592163 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
||| || |||||||| | |||||||| ||||| |||||||||||||||||||||| |||||||||||| || |||||||||| ||| || || ||||| |
|
|
| T |
2592162 |
gtgaccttagattataaatttttatgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatgatcgttgattt |
2592063 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattttcctgcatcaat |
259 |
Q |
| |
|
|||||||||||||| |||||||| || || |||||||| |||||||| |
|
|
| T |
2592062 |
cccagaaccactttctcctaccaacgctgttgattttccggcatcaat |
2592015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 2623806 - 2623560
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
|||||||||| |||| |||| | |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
2623806 |
tcatcaacctgatcaccatatgatccatatgcaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtttcctta |
2623707 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
|||| || |||||||| || ||||||||||| || ||||||||||||||||||| || |||||||||||| || |||||||||| ||| || || ||||| |
|
|
| T |
2623706 |
atgaccttagattataagtttttatgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcctatgatcgttgattt |
2623607 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattttcctgcatcaa |
258 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||| ||||||| |
|
|
| T |
2623606 |
cccagaaccacttttccctaccagagctgtcgattttccagcatcaa |
2623560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 2451038 - 2450806
Alignment:
| Q |
12 |
tcatcaaccttatcatcataagctccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctca |
111 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||||| ||| || ||||| | |
|
|
| T |
2451038 |
tcatcaacctta---tcatatgctccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttcctta |
2450942 |
T |
|
| Q |
112 |
atgatctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattt |
211 |
Q |
| |
|
|||| || |||||||| | |||||| || ||||| ||||| |||||||||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||| |
|
|
| T |
2450941 |
atgaccttagattataagactttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatgattgtcgattt |
2450842 |
T |
|
| Q |
212 |
tccagaaccactttcccctaccaaagccgtcgattt |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2450841 |
tccagaaccactttccccgaccaaagccgttgattt |
2450806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 17870445 - 17870669
Alignment:
| Q |
35 |
tccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtcttt |
134 |
Q |
| |
|
|||||||||||| || || |||||||| | | | | ||||||||||||||| |||||||| | |||||||| || | ||| | || ||||||| ||| |
|
|
| T |
17870445 |
tccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttt |
17870544 |
T |
|
| Q |
135 |
atgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctacca |
234 |
Q |
| |
|
|||| | |||| || |||||||| | ||||| | ||||||||||||||| || |||| || ||| || || ||||| ||||| || |||| ||| || | |
|
|
| T |
17870545 |
atgtttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatgatggttgatttgccagacccgctttgccccacta |
17870644 |
T |
|
| Q |
235 |
aagccgtcgattttcctgcatcaat |
259 |
Q |
| |
|
| ||||||||||| ||||| ||||| |
|
|
| T |
17870645 |
atgccgtcgatttccctgcttcaat |
17870669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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