View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14155_high_1 (Length: 647)
Name: NF14155_high_1
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 65 - 631
Target Start/End: Complemental strand, 37201216 - 37200650
Alignment:
| Q |
65 |
ctaacctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgtaacaactcagcctcaatcttggtatctttt |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | | | || |
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| T |
37201216 |
ctaacctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgcagcaactcagcctcaatctctgcaccctta |
37201117 |
T |
|
| Q |
165 |
gcaatagactccaaagtgtcattagaactaagatggtatgtgatgaacaaaccataatccatagaaacctctctattcccacaagaacaattaacagtaa |
264 |
Q |
| |
|
|||||||||||||||||||| | | ||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37201116 |
gcaatagactccaaagtgtcctcacttctaagtggatatgtgatgaacaatccataatccatagaaacctctttattcccacaagaacaattaacagtaa |
37201017 |
T |
|
| Q |
265 |
ctttaatcattgcaaaatcaggaatattagttggtctataaacattgaagttttgcatccaaacatcagtagtcaaatttgaaaaactctcttctgcaac |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201016 |
ctttaatcattgcaaaatcaggaatattagttggtctataaacattgaagttttgcatccaaacatcagtagtcaaatttgaaaaactctcttctgcaac |
37200917 |
T |
|
| Q |
365 |
tgatgtatatgtttctcctggctgaagctcatagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattcacccttttg |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
37200916 |
tgatgtatatgtttctcctggctgaagctcatagagaaatgtataagcaagaaactctccattgatgcaattacaagggaagggaacattcgcccttttg |
37200817 |
T |
|
| Q |
465 |
tttttgttgttgttgatgatgatatcttgaggttttgaaagaacattggatttcataatgtttgaaatatatgtaaggttggaaacatggtttaaggtgt |
564 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37200816 |
tttttgtcgttgttgatgatgatatcttgaggttttgaaagaacattggatttcataatgtttgaaatatatgtaaggttggaaacatggtttaaggtgt |
37200717 |
T |
|
| Q |
565 |
atgacgctagagctagactacaaccttcgttacactttgattctgttgaagctattaacaagataag |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37200716 |
atgacgctagagctagactacaaccttcgttacactttgattctgttgaagctattaacaagataag |
37200650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 67 - 288
Target Start/End: Complemental strand, 37221715 - 37221494
Alignment:
| Q |
67 |
aacctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgtaacaactcagcctcaatcttggtatcttttgc |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||| ||||||| || | |
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|
| T |
37221715 |
aacctttccctggaataaaaacaagaccacttccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttaga |
37221616 |
T |
|
| Q |
167 |
aatagactccaaagtgtcattagaactaagatggtatgtgatgaacaaaccataatccatagaaacctctctattcccacaagaacaattaacagtaact |
266 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||| |
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|
| T |
37221615 |
aatagactccaaagtgtccttagaactaagagggtatgtgatgaacaaaccataatccttagaaacctctctgctcccacaggaacagttaacagtaaca |
37221516 |
T |
|
| Q |
267 |
ttaatcattgcaaaatcaggaa |
288 |
Q |
| |
|
|||| ||| ||| || |||||| |
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|
| T |
37221515 |
ttaaccatcgcagaaacaggaa |
37221494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 66 - 288
Target Start/End: Complemental strand, 37227189 - 37226967
Alignment:
| Q |
66 |
taacctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgtaacaactcagcctcaatcttggtatcttttg |
165 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| | ||||||| ||| || |||||||| || | |
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|
| T |
37227189 |
taacctttccctggaatataaacaagaccccttccttggctgaaattgacaccagggttgtacctctgcagcaactcacccttaaccttggtatacttag |
37227090 |
T |
|
| Q |
166 |
caatagactccaaagtgtcattagaactaagatggtatgtgatgaacaaaccataatccatagaaacctctctattcccacaagaacaattaacagtaac |
265 |
Q |
| |
|
|||| || ||||||||||| | || |||||| | ||||| ||||||||||||||||| | |||||||||| |||||||| |||||||||||||| || |
|
|
| T |
37227089 |
caatggattccaaagtgtcgtcaggtctaagaggatatgtaatgaacaaaccataatcttttgaaacctctccgttcccacaggaacaattaacagtgac |
37226990 |
T |
|
| Q |
266 |
tttaatcattgcaaaatcaggaa |
288 |
Q |
| |
|
|||||||| || ||||||||| |
|
|
| T |
37226989 |
attaatcatgacagaatcaggaa |
37226967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 68 - 290
Target Start/End: Complemental strand, 37440762 - 37440536
Alignment:
| Q |
68 |
acctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgtaacaactcagcctcaatcttggtatcttttgca |
167 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||| | ||||||||| || ||||||||||| |||||| |
|
|
| T |
37440762 |
acctttccctggaataaaaaccagaccacttccttggctgaaattcacacctgggttgtacctctgcagcaactcagcatccatcttggtatcctttgca |
37440663 |
T |
|
| Q |
168 |
atagactcca----aagtgtcattagaactaagatggtatgtgatgaacaaaccataatccatagaaacctctctattcccacaagaacaattaacagta |
263 |
Q |
| |
|
|| ||||||| ||||||| | |||||||||| | ||||| | |||||||||||||||| | |||||| ||| | ||||| ||||| ||||||||| |
|
|
| T |
37440662 |
atggactccaaactaagtgtcctcagaactaagaggatatgttacgaacaaaccataatccttggaaaccagtctttctccacaggaacagttaacagta |
37440563 |
T |
|
| Q |
264 |
actttaatcattgcaaaatcaggaata |
290 |
Q |
| |
|
|| |||| ||| || ||||||||||| |
|
|
| T |
37440562 |
acattaaccatcacagaatcaggaata |
37440536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 68 - 270
Target Start/End: Original strand, 37386765 - 37386967
Alignment:
| Q |
68 |
acctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgtaacaactcagcctcaatcttggtatcttttgca |
167 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |||||||| || || || |||| || ||| |
|
|
| T |
37386765 |
acctttccctggaataaaaaccagcccacttcctttgctgaaattcacaccagggttgtacttctgtagcaactcaggcttaacttttgtatgcttcgca |
37386864 |
T |
|
| Q |
168 |
atagactccaaagtgtcattagaactaagatggtatgtgatgaacaaaccataatccatagaaacctctctattcccacaagaacaattaacagtaactt |
267 |
Q |
| |
|
|| |||||||||||||| | |||||||||| | ||||| |||||||||||||||||| | |||||| | | | ||||| ||||| ||||||||||| | |
|
|
| T |
37386865 |
atggactccaaagtgtcctcagaactaagaggatatgttatgaacaaaccataatccttggaaaccattttgtctccacaggaacagttaacagtaacat |
37386964 |
T |
|
| Q |
268 |
taa |
270 |
Q |
| |
|
||| |
|
|
| T |
37386965 |
taa |
37386967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 534
Target Start/End: Complemental strand, 37207319 - 37207256
Alignment:
| Q |
471 |
ttgttgttgatgatgatatcttgaggttttgaaagaacattggatttcataatgtttgaaatat |
534 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
37207319 |
ttgttgtagatgataatatcttgaggttttgaaagaacttcggatttcataaggtttgaaatat |
37207256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 37440466 - 37440380
Alignment:
| Q |
371 |
atatgtttctcctggctgaagctcatagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattcac |
457 |
Q |
| |
|
|||||| |||| |||||||||||| || ||||| || | | |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
37440466 |
atatgtatctcttggctgaagctcgtacagaaacgtgtgaccaagaaactcatcattgatgcaatcacaagggaatggaacattcac |
37440380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 37207608 - 37207539
Alignment:
| Q |
201 |
tatgtgatgaacaaaccataatccatagaaacctctctattcccacaagaacaattaacagtaactttaa |
270 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| |||||||| ||||| |||| |||||| |||| |
|
|
| T |
37207608 |
tatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaa |
37207539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 37221386 - 37221325
Alignment:
| Q |
396 |
tagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattcac |
457 |
Q |
| |
|
||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37221386 |
tagagaaatgtgtgaccaagaaactcatcattgatgcaatcacaagggaagggaacattcac |
37221325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 37226859 - 37226799
Alignment:
| Q |
396 |
tagagaaatgtataagcaagaaactctccattgatgcaatcacaagggaagggaacattca |
456 |
Q |
| |
|
||||||||||| | | |||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
37226859 |
tagagaaatgtgtgaccaagaaactcatcattgatgcaatcacaagggaatggaacattca |
37226799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 538
Target Start/End: Original strand, 37387195 - 37387247
Alignment:
| Q |
486 |
atatcttgaggttttgaaagaacattggatttcataatgtttgaaatatatgt |
538 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
37387195 |
atatctagaggttttgaaacaacattggattgcatgatgtttgaaatatatgt |
37387247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 37215748 - 37215701
Alignment:
| Q |
65 |
ctaacctttccctggaataaaaacaagaccacttcctttgctgaaatt |
112 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
37215748 |
ctaacctttccctcgaatataaacaagaccacttccttggctgaaatt |
37215701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 37196114 - 37196036
Alignment:
| Q |
192 |
ctaagatggtatgtgatgaacaaaccataatccatagaaacctctctattcccacaagaacaattaacagtaactttaa |
270 |
Q |
| |
|
|||||| | ||||| || ||||||||||||||| | ||||| || || |||||||| ||||||||||||||||| |||| |
|
|
| T |
37196114 |
ctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacatgaacaattaacagtaacattaa |
37196036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 37195894 - 37195849
Alignment:
| Q |
412 |
caagaaactctccattgatgcaatcacaagggaagggaacattcac |
457 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
37195894 |
caagaaactcatcatggatgcaatcacaagggaatggaacattcac |
37195849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 37387091 - 37387135
Alignment:
| Q |
412 |
caagaaactctccattgatgcaatcacaagggaagggaacattca |
456 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
37387091 |
caagaaactcgtcattaatgcaatcacaagggaatggaacattca |
37387135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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