View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14155_low_10 (Length: 423)
Name: NF14155_low_10
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 25909069 - 25908669
Alignment:
| Q |
19 |
aaacatgctataatttgcttaccattgaatggctattgttcattaaacttctgcaataagttcaaactttcctccatttctcacattttttgctgtgatt |
118 |
Q |
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| T |
25909069 |
aaacatgctataatttgcttaccattgaatggctattgttcattaaacttctgcaataagttcaaactttcctccatttctcacattttttgctgtgatt |
25908970 |
T |
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| Q |
119 |
aaacgtcatatgtgtgtattgtgtatcctatgcttgcatcagtgcatggattgtaacaacctcaaagccaactcttcttgatcttccgtttgtttccttg |
218 |
Q |
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| T |
25908969 |
aaacgtcatatgt----attgtgtatcctatgcttgcatcagtgcatggattgtaacaacctcaaagccaactcttcttgatcttccgtttgtttccttg |
25908874 |
T |
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| Q |
219 |
aagcttcttttctttcaccctcatcactgtcactatcaaagtatattttactctttttatgacgtctatttaccgtttcgtctcctgacccagaggtgtt |
318 |
Q |
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| T |
25908873 |
aagcttcttttctttcaccctcatcattgtcactatcaaagtatattttactctttttatgacgtctatttaccgttttgtctcctgacccagaggtgtt |
25908774 |
T |
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| Q |
319 |
atcttggttgtcctcttcttcctcattaccagccttccatttcattttctgcttaaattttttatccctaagtcgctgacgctctacaagtttgtcttcc |
418 |
Q |
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| T |
25908773 |
atcttggttgtcctcttcttcctcattaccagccttccatttcattttctgcttaaattttttatccctaagtcgctgacgctctacaagtttgtcttcc |
25908674 |
T |
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| Q |
419 |
ttgtc |
423 |
Q |
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| T |
25908673 |
ttgtc |
25908669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 27 - 423
Target Start/End: Original strand, 40421961 - 40422359
Alignment:
| Q |
27 |
tataatttgcttaccattgaatggctattgttcattaaacttctgcaataagttcaaactttcctccatttctcacattttttgctgtgattaaacgtca |
126 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
40421961 |
tataatttgcttaccattgaatggctattgttcattgaacttctgcaataagttcaaacttccctccatttctcacattttt-gcagtgattaaacgtca |
40422059 |
T |
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| Q |
127 |
tatgtgtgtattgtgtatcctatgcttgcatcagtgcatggattgtaacaacctcaaagccaactcttcttgatcttccgtttgtttccttgaagcttct |
226 |
Q |
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| T |
40422060 |
tatatgtgtattatgtatcctatgcttgcatcagtgcatggattgtaacaacttcaaagccaactcttcttgatcttccgtttgtcttcttgaagcttct |
40422159 |
T |
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| Q |
227 |
tttctttcaccctcatcactgtcactatcaaagtatattttactctttttatgacgtctatttaccgtttcgtctc---ctgacccagaggtgttatctt |
323 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| | ||||| |
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| T |
40422160 |
tttctttgaccctcatcactgtcactgtcaaagtatattttactctttttatgacgtctatttatcggttcgtctccttctgacccagaggtatcatctt |
40422259 |
T |
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| Q |
324 |
ggttgtcctcttcttcctcattaccagccttccatttcattttctgcttaaattttttatccctaagtcgctgacgctctacaagtttgtcttccttgtc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
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| T |
40422260 |
ggttgtcctcttcttcctcattaccagccttccatttcattttctgcttaaattttttatctctaagtcgctgacgctccacaagtttatcttccttgtc |
40422359 |
T |
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