View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14155_low_11 (Length: 414)
Name: NF14155_low_11
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 72 - 399
Target Start/End: Complemental strand, 35972559 - 35972222
Alignment:
| Q |
72 |
gaagataggtggtttaaatagcatgcttcgagaatgaaacaatgatcctcaatgtcaatgttagcaatttgggtaacccaaaatcacgattagtgtagct |
171 |
Q |
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| T |
35972559 |
gaagataggtggtttaaatagcatgcttcgataatgaaacaatgatcctcgatgtcaatgttagcaatttgggtaacccaaaatcacgattagtgtagct |
35972460 |
T |
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| Q |
172 |
tttacaaaatcagggtcattaaccatattttgcaaacatt---------tttccatttcttacatcaatcaggtttattacagaacagtttttaagaaga |
262 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35972459 |
tttacaaaatcagggtcattgaccatattttgcaaacatgcattgtgaatttccatttcttacatcaatcaggtttattacagaacagtttttaagaaga |
35972360 |
T |
|
| Q |
263 |
gaggagaa-agtagctcactttgaagggccaaagagaacaataatagccaatataatcacatgtagagcacgaatgaaacaccaacatcatttagattgt |
361 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35972359 |
gaggagaagagtagctcactttgaagggccaaagagaacaataatagccaatataatcacatgtagagcacgaatgaaacaccaacatcatttagattgt |
35972260 |
T |
|
| Q |
362 |
ttttagtatgtaaattcagagcatataacatgaaatat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35972259 |
ttttagtatgtaaattcagagcatataacatgaaatat |
35972222 |
T |
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