View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14155_low_13 (Length: 400)

Name: NF14155_low_13
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14155_low_13
NF14155_low_13
[»] chr4 (9 HSPs)
chr4 (12-265)||(3672015-3672273)
chr4 (46-165)||(55659575-55659694)
chr4 (47-165)||(54862390-54862508)
chr4 (88-165)||(54626843-54626920)
chr4 (83-146)||(51315736-51315799)
chr4 (98-146)||(52986667-52986715)
chr4 (177-239)||(55659815-55659877)
chr4 (101-146)||(50192339-50192384)
chr4 (101-165)||(55635045-55635109)
[»] chr8 (3 HSPs)
chr8 (47-173)||(9889319-9889445)
chr8 (172-264)||(9889137-9889229)
chr8 (293-370)||(9885291-9885368)
[»] chr2 (1 HSPs)
chr2 (95-135)||(13401257-13401297)
[»] chr1 (1 HSPs)
chr1 (92-136)||(37311443-37311487)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 3672015 - 3672273
Alignment:
Q  12 aggcaacgtttcccaacgcccatgaagcctcatgtcgaacagcaacactaggtgaac-----tgagtaggttgactagtaatggtacagccccatgatca 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  3672015 aggcaacgtttcccaacgcccatgaagcttcatgtcgaacagcaacactaggtgaacgtaactgagtaggttgactagtaatggtacagccccatgatca 3672114  T
Q  107 attacaaccttagtgttctcagaagttccacctgctatgtatgcgagtatccaagcagcaaaaaactggcgttgaggaaaatcgtcaataactagaaatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3672115 attacaaccttagtgttctcagaagttccacctgctatgtatgcgagtatccaagcagcaaaaaactggcgttgaggaaaatcgtcaataactagaaatt 3672214  T
Q  207 caacaagacgaggaacggcatcagattgaataagttcatcaatcgtaaaactgggtgcc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3672215 caacaagacgaggaacggcatcagattgaataagttcatcaatcgtaaaactgggtgcc 3672273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 55659575 - 55659694
Alignment:
Q  46 tcgaacagcaacactaggtgaactgagtaggttgactagtaatggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgctatg 145  Q
    ||||||| || | ||||||||||| ||||| ||||| |||| |||||||||||| |||||||| || |||||||||||| |||||||||||||||||| |    
T  55659575 tcgaacatcatcgctaggtgaactaagtagcttgacaagtattggtacagccccgtgatcaatgaccaccttagtgttcacagaagttccacctgctacg 55659674  T
Q  146 tatgcgagtatccaagcagc 165  Q
    |  | |||||||||||||||    
T  55659675 ttcgtgagtatccaagcagc 55659694  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 54862390 - 54862508
Alignment:
Q  47 cgaacagcaacactaggtgaactgagtaggttgactagtaatggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 146  Q
    ||||||||| |||| |||||||| ||||| ||||  | || |||||| ||||||||||||||||| |||||||||||||| |||||||||  ||||||||    
T  54862390 cgaacagcatcacttggtgaactaagtagcttgataaatattggtactgccccatgatcaattaccaccttagtgttctccgaagttccagatgctatgt 54862489  T
Q  147 atgcgagtatccaagcagc 165  Q
     || ||||  |||||||||    
T  54862490 ttgtgagtgcccaagcagc 54862508  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 54626920 - 54626843
Alignment:
Q  88 tggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgctatgtatgcgagtatccaagcagc 165  Q
    |||||| || |||||||||| ||| |||||||||||||||||||||||| ||||||||| || ||||  |||||||||    
T  54626920 tggtactgcgccatgatcaactaccaccttagtgttctcagaagttccagctgctatgtttgtgagtgcccaagcagc 54626843  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 51315799 - 51315736
Alignment:
Q  83 agtaatggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 146  Q
    |||| ||||||||| |||||||||||||  | |||||||||||||||||||||| |||||||||    
T  51315799 agtattggtacagctccatgatcaattagcaacttagtgttctcagaagttccagctgctatgt 51315736  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 52986667 - 52986715
Alignment:
Q  98 ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 146  Q
    |||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  52986667 ccatgatcaattaccaccttagtgttcttagaagttccagctactatgt 52986715  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 55659815 - 55659877
Alignment:
Q  177 gttgaggaaaatcgtcaataactagaaattcaacaagacgaggaacggcatcagattgaataa 239  Q
    ||||||||||||||||  ||| |||||||||||||| |||||||||  |  ||||||||||||    
T  55659815 gttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacgccagattgaataa 55659877  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 50192339 - 50192384
Alignment:
Q  101 tgatcaattacaaccttagtgttctcagaagttccacctgctatgt 146  Q
    |||||||| || ||||||||||||||||||||||||  ||||||||    
T  50192339 tgatcaatcaccaccttagtgttctcagaagttccagatgctatgt 50192384  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 55635109 - 55635045
Alignment:
Q  101 tgatcaattacaaccttagtgttctcagaagttccacctgctatgtatgcgagtatccaagcagc 165  Q
    ||||||||||| |||||| ||||||||||||||||   |||||||| || ||||  |||||||||    
T  55635109 tgatcaattaccaccttaatgttctcagaagttccggatgctatgtttgtgagtgcccaagcagc 55635045  T

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Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 9889445 - 9889319
Alignment:
Q  47 cgaacagcaacactaggtgaactgagtaggttgactagtaatggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889445 cgaacagcaacactaggtgaactgagtaggttgactagtaatggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 9889346  T
Q  147 atgcgagtatccaagcagcaaaaaact 173  Q
    |||||||||||||||||||||||||||    
T  9889345 atgcgagtatccaagcagcaaaaaact 9889319  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 9889229 - 9889137
Alignment:
Q  172 ctggcgttgaggaaaatcgtcaataactagaaattcaacaagacgaggaacggcatcagattgaataagttcatcaatcgtaaaactgggtgc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9889229 ctggcgttgaggaaaatcgtcaataactagaaattcaacaagacgaggaacagcatcagattgaataagttcatcaatcgtaaaactgggtgc 9889137  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 9885368 - 9885291
Alignment:
Q  293 ttaactattgtaggaacactctcgaactgcaacaacatcgacatatcgtaaattgatggttacttttcacgcttactt 370  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9885368 ttaactattgtaggaacactctcgaaatgcaacaacatcgacatatcctaaattgatggttacttttcacgcttactt 9885291  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 13401297 - 13401257
Alignment:
Q  95 gccccatgatcaattacaaccttagtgttctcagaagttcc 135  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  13401297 gccccatgatcaattaccaccttagtattctcagaagttcc 13401257  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 37311443 - 37311487
Alignment:
Q  92 acagccccatgatcaattacaaccttagtgttctcagaagttcca 136  Q
    ||||||||||| |||||||| ||||||||||| ||||| ||||||    
T  37311443 acagccccatggtcaattaccaccttagtgttttcagatgttcca 37311487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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