View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14155_low_17 (Length: 310)
Name: NF14155_low_17
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_17 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: scaffold0031 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 42119 - 41824
Alignment:
| Q |
1 |
cttaatgctgcagctgcggtgtcgaatatgggattgtttgttgctgaaatgagcgccgactcatttcagcttctaggaatggctgagaggggaatgttgc |
100 |
Q |
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| T |
42119 |
cttaatgctgcagctgcggtgtcgaatatgggattgtttgttgctgaaatgagcgccgactcatttcagcttctaggaatggctgagaggggaatgttgc |
42020 |
T |
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| Q |
101 |
ctgagttctttaccaaaaggtcgcgctacggtacgcctattatagggatacttttttcggcctccggtgtgattttactttcatggcttagttttgatga |
200 |
Q |
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| T |
42019 |
ctgagttctttaccaaaaggtcgcgctacggtacgcctattatagggatacttttttcggcctccggtgtgattttactttcatggcttagttttgatga |
41920 |
T |
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| Q |
201 |
aattgtggctgctgaaaatttcttgtactgttttggaatgattcttgagtttattgcattcattttgttgaagattaaaaaaccaaatgcatcaag |
296 |
Q |
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| T |
41919 |
aattgtggctgctgaaaatttcttgtactgtttcggaatgattcttgagtttattgcattcattttgttgaagattaaaaaaccaaatgcatcaag |
41824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 11055328 - 11055596
Alignment:
| Q |
7 |
gctgcagctgcggtgtcgaatatgggattgtttgttgctgaaatgagcgccgactcatttcagcttctaggaatggctgagaggggaatgttgcctgagt |
106 |
Q |
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| T |
11055328 |
gctgcagctgcaatgtcaaacatgggaatgttcgttgccgaaatgagcagcgactcttaccagcttctaggaatggctgagaggggaatgttgccagagt |
11055427 |
T |
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| Q |
107 |
tctttaccaaaaggtcgcgctacggtacgcctattatagggatacttttttcggcctccggtgtgattttactttcatggcttagttttgatgaaattgt |
206 |
Q |
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| T |
11055428 |
ttttcaccaagaggtctcgtcacggaacgcctcttatagggattcttttttcagcctctggtgtaattctactatcatggcttagttttcaagaaattgt |
11055527 |
T |
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| Q |
207 |
ggctgctgaaaatttcttgtactgttttggaatgattcttgagtttattgcattcattttgttgaagat |
275 |
Q |
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| T |
11055528 |
agctgcagagaatttcttgtactgtattgggatgattctggagttcattgcattcatattgttgaagat |
11055596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 51226464 - 51226229
Alignment:
| Q |
25 |
aatatgggattgtttgttgctgaaatgagcgccgactcatttcagcttctaggaatggctgagaggggaatgttgcctgagttctttaccaaaaggtcgc |
124 |
Q |
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| T |
51226464 |
aatatgggaatgtttgtagctgagatgagtagtgactcatttcagcttctaggtatggctgaaagaggtatgcttcctgaattctttgcaaaaaggtcac |
51226365 |
T |
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| Q |
125 |
gctacggtacgcctattatagggatacttttttcggcctccggtgtgattttactttcatggcttagttttgatgaaattgtggctgctgaaaatttctt |
224 |
Q |
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| T |
51226364 |
gttatggaacacctcttattggtattttgttctcagcttctggtgtggttttgctttcttggttgagttttcaagaaattgttgctgctgaaaatttctt |
51226265 |
T |
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| Q |
225 |
gtactgttttggaatgattcttgagtttattgcatt |
260 |
Q |
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| T |
51226264 |
atactgttttggtatgcttatggagtttgttgcatt |
51226229 |
T |
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