View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14155_low_18 (Length: 299)

Name: NF14155_low_18
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14155_low_18
NF14155_low_18
[»] chr4 (6 HSPs)
chr4 (101-285)||(13770065-13770249)
chr4 (101-275)||(31940039-31940213)
chr4 (101-285)||(19032608-19032792)
chr4 (101-285)||(32823347-32823531)
chr4 (101-285)||(24783148-24783330)
chr4 (104-207)||(30226288-30226391)
[»] chr2 (9 HSPs)
chr2 (101-285)||(5380960-5381144)
chr2 (101-285)||(1592656-1592840)
chr2 (101-285)||(36314139-36314323)
chr2 (104-285)||(25280404-25280585)
chr2 (101-207)||(19590519-19590625)
chr2 (102-207)||(41055503-41055608)
chr2 (101-180)||(12563554-12563633)
chr2 (104-200)||(21278961-21279057)
chr2 (104-207)||(21612994-21613097)
[»] chr7 (9 HSPs)
chr7 (101-285)||(2829761-2829945)
chr7 (101-285)||(304172-304356)
chr7 (101-285)||(45809518-45809711)
chr7 (104-207)||(5480884-5480987)
chr7 (101-175)||(33335367-33335440)
chr7 (104-207)||(41532757-41532860)
chr7 (140-207)||(11469205-11469272)
chr7 (102-167)||(31174195-31174260)
chr7 (175-207)||(33335626-33335658)
[»] chr6 (4 HSPs)
chr6 (102-285)||(30383819-30384002)
chr6 (101-285)||(582884-583068)
chr6 (104-285)||(7640013-7640194)
chr6 (118-285)||(3886449-3886616)
[»] chr8 (3 HSPs)
chr8 (102-285)||(2812329-2812512)
chr8 (101-285)||(18606327-18606511)
chr8 (147-278)||(26858473-26858604)
[»] chr3 (3 HSPs)
chr3 (101-285)||(35734031-35734213)
chr3 (101-158)||(40285897-40285954)
chr3 (104-207)||(52724950-52725053)
[»] chr5 (3 HSPs)
chr5 (102-285)||(8403731-8403914)
chr5 (101-285)||(17172424-17172606)
chr5 (104-207)||(12106001-12106104)
[»] chr1 (2 HSPs)
chr1 (101-285)||(7493736-7493924)
chr1 (101-187)||(33409643-33409726)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 13770249 - 13770065
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  13770249 ctaatagtagctatttatgaaaattgaattcgtcggcccttcaaagactcaaattcatccataattgcatttgagctaaattgacttgcaatgttctttt 13770150  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13770149 caatgtagataaccaagctgtttgaaagaaaagcatcactcattttgtttctttgttttgtcttgagatttttcattgatgagaa 13770065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 31940039 - 31940213
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||| |||||| ||||||| ||||    
T  31940039 ctaatagtagctatttatgaaaattgaactcgacgacccttcaaagactcaaattcatccataattgcatctgagctaaactgacttacaatgtcttttt 31940138  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttca 275  Q
    ||||||| | |||||| |  |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  31940139 caatgtaaataaccaaactatttgaaagaaaatcatcactcattttgtttatttgttttgtcttgagatttttca 31940213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 19032608 - 19032792
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||||||||| ||||||||||||||||  || ||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||    
T  19032608 ctaatagtagctatatatgaaaattgaactcagcgacccttcaaacactcaaattcatccataattgcatctgagctaaactgacttgcaatttcctttt 19032707  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||| | || |||||  |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  19032708 caatgtaaataatcaagctatttgcaagaaaatcatctatcattttgtttctttgttttgtcttgagatttttcattgatgagaa 19032792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 32823347 - 32823531
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||||||||||||||| |||| |||||| ||||| || ||||||| |||||||| ||||||||||| |||| |||  |||||||||||||| ||||    
T  32823347 ctaatagtagctatttatgataattaaactcggcggccttttaaagactaaaattcatccataattgcatatgaggtaatctgacttgcaatgtcttttt 32823446  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||| | ||||||||  ||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||    
T  32823447 caatgtaaataaccaagctatttgaaagaaaatcattgctcattttgtttctttattttgtcttgagatttttcattgatgagaa 32823531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 24783148 - 24783330
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||||||||||||||||||| ||||||| || || ||||||||||||||||||| |||||||||||  |||||||| |||||||||||||||||||    
T  24783148 ctaatagtagctatttatgaaaatcgaactcggcgaccattcaaagactcaaattcatccataattgcat--gagctaaactgacttgcaatgtcctttt 24783245  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
     |||||  | |||||||   |||| |||||||| |||| |||||||| ||||||||||| |||||||||||||||||| ||||||    
T  24783246 taatgtgaataaccaagatatttgcaagaaaataatcactcattttgattctttgttttatcttgagatttttcattgttgagaa 24783330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 30226288 - 30226391
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    |||||||||||||| |||| | ||||| | ||  |||||||||||||||||||||  |||| ||| | |||  | || |||||||||||||| |||||||    
T  30226288 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttgcaatgtctttttcaa 30226387  T
Q  204 tgta 207  Q
    ||||    
T  30226388 tgta 30226391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 5380960 - 5381144
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  5380960 ctaatagtggctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttgcaatgttctttt 5381059  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5381060 caatgtagataaccaagttgtttgaaagaaaatcatcactcattttgtttctttgttttgtcttgagatttttcattgatgagaa 5381144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 1592656 - 1592840
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | | |||||| ||||||||||||| ||||    
T  1592656 ctaataatagctacttatgaaaattgaactcggcggcccttcaaagactcaaattcatccataattgcatcttaactaaatggacttgcaatgtcttttt 1592755  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||  |  |||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  1592756 caatgttaatgaccaagctatttgaaagaaaatcatcactcattttgtttcattgttttgtcttgagatttttcattgatgagaa 1592840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 36314139 - 36314323
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||||| ||||    
T  36314139 ctaataatagctacttatgaaaattgaactcggcggcccttcaaagactcaaattcatccataattgcatcttagctaaatggacttgcaatgtcttttt 36314238  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||  |  |||||||  |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  36314239 caatgttaatgaccaagctatttgaaagaaaatcatcactcattttgttttattgttttgtcttgagatttttcattgatgagaa 36314323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 104 - 285
Target Start/End: Complemental strand, 25280585 - 25280404
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    ||||||||||||||| ||||||||||||| |  |||||||||||||||||||||| ||||||||||| | || ||||  |||||||||||||||||||||    
T  25280585 atagtagctatttataaaaattgaactcgaccacccttcaaagactcaaattcatccataattgcatctcaggtaaaccgacttgcaatgtccttttcaa 25280486  T
Q  204 tgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    |||| | ||||||||   ||| ||||||||||||| ||||||||||||||| ||||||||  ||||| ||||||||||||||    
T  25280485 tgtaaataaccaagctacttgcaagaaaatcatcactcattttgtttctttattttgtctcaagattcttcattgatgagaa 25280404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 207
Target Start/End: Original strand, 19590519 - 19590625
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    ||||||||| ||||||||||||||||||||||  | ||||||||| |||||||||||| |||| |||||| | ||||||| ||||||| |||||||||||    
T  19590519 ctaatagtaactatttatgaaaattgaactcgaagacccttcaaaaactcaaattcatccatagttgcatcttagctaaaatgacttgaaatgtcctttt 19590618  T
Q  201 caatgta 207  Q
    |||||||    
T  19590619 caatgta 19590625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 41055503 - 41055608
Alignment:
Q  102 taatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttc 201  Q
    ||||||||||||||||||||| | ||||||  || || || |||||||||||||||| ||||||||  | ||||||||| |||| | |||||||||||||    
T  41055503 taatagtagctatttatgaaagtcgaactcaacgaccttttaaagactcaaattcatccataattgtctatgagctaaactgacatccaatgtccttttc 41055602  T
Q  202 aatgta 207  Q
    ||||||    
T  41055603 aatgta 41055608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 12563554 - 12563633
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaa 180  Q
    |||||||||||| |||||||||| ||||| | |    |||||||| ||||||||||||||||||||||||||||||||||    
T  12563554 ctaatagtagctgtttatgaaaactgaacccattaatccttcaaaaactcaaattcattcataattgcatttgagctaaa 12563633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 21279057 - 21278961
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    ||||||||||||||| ||| | ||||||| ||  |||||||| |||||||||||| ||||| ||| | |||| | || ||||||||||| |||||||    
T  21279057 atagtagctatttataaaagtcgaactcgacgatccttcaaatactcaaattcatccataagtgcctatgagtttaagtgacttgcaatatcctttt 21278961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 21612994 - 21613097
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    |||||||||||||| |||| | ||||| | ||  |||||||||||||||||||||  |||| ||| | |||  | || |||||||||||||| |||||||    
T  21612994 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttgcaatgtctttttcaa 21613093  T
Q  204 tgta 207  Q
    ||||    
T  21613094 tgta 21613097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 2829945 - 2829761
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  2829945 ctaatagtagctattttttaaaaatgaactcgtcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttgcaatgtcctttt 2829846  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    |||| |||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2829845 caatatagataaccaagctgtttgaaagaaaatcatcactcattttgtttctttgttttgtcttgagatttttcattgatgagaa 2829761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 304172 - 304356
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  304172 ctaatagtagctattttttaaaaatgaactcgtcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttacaatgtcctttt 304271  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    |||| |||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  304272 caatatagataaccaagctgtttgaaagaaaatcatcactcattttgtttctttgttttgtcttgagatttttcattgatgagaa 304356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 45809518 - 45809711
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaa--------- 191  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  |||||||||| |||| |||||             
T  45809518 ctaatagtagctatttatgaaaattgaactcggcggcccttcaaagactcaaattcatccataattgc-gttgagctaaactgacctgcaatactttttt 45809616  T
Q  192 -tgtccttttcaatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
     | |  |||| |||||| | ||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  45809617 tttttttttttaatgtaaataaccaagctatttgaaagaaaatcatcgctcattttgtttctttgttttgtcttgagatttttcattgatgagaa 45809711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 5480987 - 5480884
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    ||||||||||||||||||| | ||||||| |   |||| |||||||||||||||| ||||| ||| | | || | || ||||||||||||| ||||||||    
T  5480987 atagtagctatttatgaaagtcgaactcgacaatccttgaaagactcaaattcatccataactgcctataagtttaagtgacttgcaatgttcttttcaa 5480888  T
Q  204 tgta 207  Q
    ||||    
T  5480887 tgta 5480884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 33335367 - 33335440
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgag 175  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||  ||||||  |||||||||| ||||    
T  33335367 ctaatagtagctatttatgaaaattgaactcggcgacccttgaaagactc-gattcatctataattgcatatgag 33335440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 41532860 - 41532757
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    |||||||||||||| |||| | ||||| | ||  |||||||||||||||||||||  |||| ||| | |||  | || |||||||||||||| |||||||    
T  41532860 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataactgcttatgaatttaagtgacttgcaatgtctttttcaa 41532761  T
Q  204 tgta 207  Q
    ||||    
T  41532760 tgta 41532757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 11469272 - 11469205
Alignment:
Q  140 ttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaatgta 207  Q
    |||||||||||||||||||||||||  || | |||  | || ||| ||||||||||||||||||||||    
T  11469272 ttcaaagactcaaattcattcataaccgcctatgaatttaagtgatttgcaatgtccttttcaatgta 11469205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 31174195 - 31174260
Alignment:
Q  102 taatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattg 167  Q
    ||||||||| ||||||||||| | ||||||| ||  | |||||||||||||||||||  |||||||    
T  31174195 taatagtagttatttatgaaagtcgaactcgacgatctttcaaagactcaaattcatcgataattg 31174260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 33335626 - 33335658
Alignment:
Q  175 gctaaattgacttgcaatgtccttttcaatgta 207  Q
    |||||||||||||||||| ||||||||||||||    
T  33335626 gctaaattgacttgcaatatccttttcaatgta 33335658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 30383819 - 30384002
Alignment:
Q  102 taatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  30383819 taatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcatccataattgcatctgagctaaattgacttgcaatgttcttttc 30383918  T
Q  202 aatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    || ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||    
T  30383919 aacgtagataaccaagctgtttgaaagaaaatcatcactcattttgtttctttgttttgtcttgagctttttcattgctgagaa 30384002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 582884 - 583068
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| | ||||||||  |||||||||||| ||||    
T  582884 ctaataatagctacttatgaaaattgaactcggctgcccttcaaagactcaaattcatccataattgcatcttagctaaatgaacttgcaatgtcttttt 582983  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||  |  |||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  582984 caatgttaatgaccaagctatttgaaagaaaatcatcactcattttgtttcattgttttgtcttgagatttttcattgatgagaa 583068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 104 - 285
Target Start/End: Complemental strand, 7640194 - 7640013
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    ||||||||||||| ||||||||||||||| || || |||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  7640194 atagtagctatttgtgaaaattgaactcgacgacctttcaaaaactcaaattcatccataattgcatctgagctaagttgacttgcaatgtccttttcaa 7640095  T
Q  204 tgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    |||| | ||||||    |||| | ||||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||||    
T  7640094 tgtaaataaccaaattatttgcatgaaaatcatcactcattttgtttgtttattttgccttgagatttttcattgacgagaa 7640013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 118 - 285
Target Start/End: Complemental strand, 3886616 - 3886449
Alignment:
Q  118 tgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaatgtagacaaccaag 217  Q
    ||||||||||||||| |||||| |||||||||||||||||| ||||||||||| | |||||||| ||||||||||||| ||||||||||  |  || |||    
T  3886616 tgaaaattgaactcggcggcccgtcaaagactcaaattcatccataattgcatcttagctaaatggacttgcaatgtctttttcaatgttaatgactaag 3886517  T
Q  218 cagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    |  |||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||    
T  3886516 ctatttgaaagaaaatcatcactcattttatttcattgttttgtcttgagattttttattgatgagaa 3886449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 102 - 285
Target Start/End: Complemental strand, 2812512 - 2812329
Alignment:
Q  102 taatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttc 201  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||| |||||    
T  2812512 taatagtagctatttatgaaaattgaactcggtggctcttcaaagactcaaattcatccataattgcatctgagttaaactgacttgcaatgtctttttc 2812413  T
Q  202 aatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    |||||| | ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2812412 aatgtaaataaccaagctatttgaaagaaaatcatcactcattttgtttctttgttttgtcttgagatttttcattgatgagaa 2812329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 18606511 - 18606327
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||| |||||| |||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||| | |||||||| ||||||||||||| ||||    
T  18606511 ctaataatagctacttatgaaaattgaactcggcggtccttcaaagacccaaattcatccataattgcatcttagctaaatggacttgcaatgtcttttt 18606412  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||  |  || ||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  18606411 caatgttaatgactaagctatttgaaagaaaatcatcactcattttgtttcattgttttgtcttgagatttttcattgatgagaa 18606327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 26858604 - 26858473
Alignment:
Q  147 actcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaatgtagacaaccaagcagtttgaaagaaaatcatcattcatttt 246  Q
    |||||||||||| |||| |||| | ||||||||| ||| |||||||| ||||||||||||  | ||||||||  |||  | ||||||| ||| || ||||    
T  26858604 actcaaattcatccatatttgcctctgagctaaactgatttgcaatgaccttttcaatgtcaataaccaagctattttcatgaaaatcgtcactcgtttt 26858505  T
Q  247 gtttctttgttttgtcttgagatttttcattg 278  Q
     ||||||| |||||||||||||||||||||||    
T  26858504 atttctttattttgtcttgagatttttcattg 26858473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 35734031 - 35734213
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||| |||||||  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35734031 ctaacagtagctgcttataaaaattgaactcggcggcccttcaaagactcaaattcattcataattgcatctgagctaaattgacttgcaatgtcctttt 35734130  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||||| ||||||||  ||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  35734131 caatgtagataaccaagctatttgaaa-aaaat-atcactcattttgtttctttcttttgtcttgagatttttcattgatgagaa 35734213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 40285954 - 40285897
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcat 158  Q
    ||||||||||||||||||||||||||||||||  || | |||||| ||||||||||||    
T  40285954 ctaatagtagctatttatgaaaattgaactcgatggactttcaaaaactcaaattcat 40285897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 52725053 - 52724950
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    |||||||||||||| |||| | ||||| | ||  |||||||||||||||||||||  |||| ||| | |||  | || |||||||||||||| |||||||    
T  52725053 atagtagctatttacgaaagtcgaacttggcgatccttcaaagactcaaattcatctataaatgcttatgaatttaagtgacttgcaatgtctttttcaa 52724954  T
Q  204 tgta 207  Q
    ||||    
T  52724953 tgta 52724950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 102 - 285
Target Start/End: Complemental strand, 8403914 - 8403731
Alignment:
Q  102 taatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttc 201  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||  ||| |||| ||||||||||||| ||||||    
T  8403914 taatagtagctatttatgaaaattgaactcggcgacccttcaaagactcaaattcatccataattgcatcagagataaactgacttgcaatgttcttttc 8403815  T
Q  202 aatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    ||||||   |||||| |  |||| ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  8403814 aatgtaagtaaccaaactatttgcaagaaaatcatctatcattttgtttctttgttttatcttgagatttttcattgatgagaa 8403731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 17172606 - 17172424
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtcctttt 200  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||   | ||||| |||||||||    
T  17172606 ctaatagtggctatttatgaaaattgaactcgacggcccttcaaagactcaaattcatccataattgcatctgacctaaac--atttgcattgtcctttt 17172509  T
Q  201 caatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    | ||||  | ||||||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  17172508 cgatgttaataaccaagctatttgaaagaaaatcatcactcattttgtttctttattttgtcttgagatttttcattgatgagaa 17172424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 12106104 - 12106001
Alignment:
Q  104 atagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgcaatgtccttttcaa 203  Q
    |||||||||||||| |||| | ||||||| ||  |||||||||||||||||||||  |||| ||| | |||| | |  |||||||||||||| |||||||    
T  12106104 atagtagctatttacgaaagtcgaactcggcgatccttcaaagactcaaattcatctataactgcttatgagtttatgtgacttgcaatgtctttttcaa 12106005  T
Q  204 tgta 207  Q
    ||||    
T  12106004 tgta 12106001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 7493924 - 7493736
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgacttgca----atgtcc 196  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||| ||||||||| |||| ||||    || |      
T  7493924 ctaatagtagctatttatgaaaattgaactcggcagcccttcaaagactcaaatttatccataattgcatctgagctaaactgacctgcaatatatattt 7493825  T
Q  197 ttttcaatgtagacaaccaagcagtttgaaagaaaatcatcattcattttgtttctttgttttgtcttgagatttttcattgatgagaa 285  Q
    |||| |||||| | ||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  7493824 tttttaatgtaaataaccaagctatttgaaagaaaatcatcgctcattttgtttctttgttttgtcttgagatttttcattgatcagaa 7493736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 33409643 - 33409726
Alignment:
Q  101 ctaatagtagctatttatgaaaattgaactcgtcggcccttcaaagactcaaattcattcataattgcatttgagctaaattgactt 187  Q
    ||||||||||||||||||||||||||||| |  ||| | || |||||||| ||||||| ||||||||||   |||||||||||||||    
T  33409643 ctaatagtagctatttatgaaaattgaacccaacggtcttttaaagactcgaattcatccataattgca---gagctaaattgactt 33409726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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