View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14155_low_19 (Length: 294)
Name: NF14155_low_19
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_19 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 3152279 - 3152000
Alignment:
| Q |
15 |
atcaggaacaccattattattcttcgaaggcgccttttcttttgttagatcagcacaatacacttcattatagctgttatagtatgtatggcaataatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3152279 |
atcaggaacaccattattattcttcgaacgcgccttttcttttgttagatcagcacaatacacttcattatagctattatagtatgtatggcaataatat |
3152180 |
T |
|
| Q |
115 |
actggtaaggatgctgtgtcaattggtaacatttgggatctatcgcggaaatgtggggcacactgaggcttagttaacttatctttgagctcctgtgaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3152179 |
actggtaaggatgctgtgtcaattggtaacatttgggatctatcgcggaaatgtggggcacactgaggcttagttaacttgtctttgagctcctgtgaga |
3152080 |
T |
|
| Q |
215 |
ttaaatatcttctgggacacagctctgtcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagc |
294 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3152079 |
ttaaatatcttctgggacacaactctgtcatgcttttgtataaattatcagtgcaatttaaagaagagattccttgaagc |
3152000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 15381183 - 15381131
Alignment:
| Q |
242 |
tcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |||||||||| |
|
|
| T |
15381183 |
tcatgcttttgtataaattatcaatgcagcttaacaaagagaatccttgaagc |
15381131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 21200505 - 21200452
Alignment:
| Q |
241 |
gtcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagc |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
21200505 |
gtcacgcttttgtataaattatcaatgcagtttaaagaagagaaaccttgaagc |
21200452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 24285020 - 24284972
Alignment:
| Q |
246 |
gcttttgtataaattatcaatgcaatttaaagaagagattccttgaagc |
294 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
24285020 |
gcttttatataaattatcaatgcagcttaaagaagagaatccttgaagc |
24284972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 24121207 - 24121255
Alignment:
| Q |
241 |
gtcatgcttttgtataaattatcaatgcaatttaaagaagagattcctt |
289 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
24121207 |
gtcatgcttttatataaaatatcaatgcagcttaaagaagagaatcctt |
24121255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 10989740 - 10989692
Alignment:
| Q |
246 |
gcttttgtataaattatcaatgcaatttaaagaagagattccttgaagc |
294 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
10989740 |
gcttctgtataaattatcaatgcagcttaaagaagagaatccttgaagc |
10989692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University