View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14155_low_21 (Length: 255)

Name: NF14155_low_21

Description: NF14155

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14155_low_21

[»] chr4 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 166; E-Value: 6e-89

Query Start/End: Original strand, 39 - 237

Target Start/End: Complemental strand, 25108185 - 25107991

Alignment:

Q	39	ggtacaggagcaatagcaacttgcatgcatgtatggttgtattcttagattagaatcttgaaccagtatttaattatattgaaacatatgcatatgcatg	138	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	25108185	ggtacaggagcaatagcaacttgcatgcatgtatggttgtattcttagattagaatcttaaaccagtatttaattatattgaagcatatgcatatg----	25108090	T

Q	139	ttcattcaaagaaagtaagacatggattctataatccggtcattcaaagtatatcaattaataaagcataaacttttgtgtatgatatcatggaattgg	237	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25108089	ttcgttcaaagaaagtaagacatggattctataatccggtcattcaaagtatattaattaataaagcataaacttttgtgtatgatatcatggaattgg	25107991	T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 30; E-Value: 0.00000009

Query Start/End: Original strand, 70 - 135

Target Start/End: Complemental strand, 13234474 - 13234409

Alignment:

Q	70	tatggttgtattcttagattagaatcttgaaccagtatttaattatattgaaacatatgcatatgc	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	13234474	tatggttgtattcttagattggaatattaaatcgatatttagttatattgaatcatatacatatgc	13234409	T

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