View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14155_low_25 (Length: 237)
Name: NF14155_low_25
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_25 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 4981447 - 4981273
Alignment:
| Q |
1 |
tctaaattatataaatataataagtagcccctatcttccaataaataaataaatgggtagtctcaacggtttataaaatttgttaatttagtctaaacaa |
100 |
Q |
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| T |
4981447 |
tctaaattatataaatataataagtagcccctatcttccaataaataaataaatgggcagtctcaacggtttataaaatttgttaatttggtctaaacta |
4981348 |
T |
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| Q |
101 |
tcaagatgtcatggatttatttaatgaaatttcctactttaaaatgaaatagctataattatagttttggtccct |
175 |
Q |
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| T |
4981347 |
tcaagatgtcatggatttatttaatgaaatttcctactttaaaatgaaatagctataattacagtttaggtccct |
4981273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 4981259 - 4981230
Alignment:
| Q |
184 |
ctaatggaattgacttctctattttaaaat |
213 |
Q |
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| T |
4981259 |
ctaatggaattgacttctctattttaaaat |
4981230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 12142075 - 12142043
Alignment:
| Q |
205 |
ttttaaaatgagtagtgatatttgaacaaccat |
237 |
Q |
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| T |
12142075 |
ttttacaatgagtagtgatatttgaacaaccat |
12142043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 1580166 - 1580194
Alignment:
| Q |
209 |
aaaatgagtagtgatatttgaacaaccat |
237 |
Q |
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| T |
1580166 |
aaaatgagtagtgatatttgaacaaccat |
1580194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 12708290 - 12708258
Alignment:
| Q |
202 |
ctattttaaaatgagtagtgatatttgaacaac |
234 |
Q |
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| T |
12708290 |
ctattttaaaatgagtagtgatatttgtacaac |
12708258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 12717835 - 12717803
Alignment:
| Q |
202 |
ctattttaaaatgagtagtgatatttgaacaac |
234 |
Q |
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| T |
12717835 |
ctattttaaaatgagtagtgatatttgtacaac |
12717803 |
T |
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