View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14155_low_27 (Length: 222)
Name: NF14155_low_27
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 52971408 - 52971222
Alignment:
| Q |
16 |
gagatgaagtgaaaatggtgatggaaaaaatgggannnnnnngcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52971408 |
gagatgaagtgaaaatggtgatggaaaaaatgggatttttttgcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagt |
52971309 |
T |
|
| Q |
116 |
gtttgaagagaatgagcctagtttggtggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52971308 |
gtttgaagagaatgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaa |
52971222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 52967467 - 52967393
Alignment:
| Q |
58 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcc |
133 |
Q |
| |
|
||||||||| ||| ||| ||||||| |||||||| |||| |||||| |||||||||||||| | ||||||||||| |
|
|
| T |
52967467 |
gcagctcagtaagtgagaaacttgagtaaaagtatagttc-aaggaggtttgtgaagtgttttaggagaatgagcc |
52967393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 2855815 - 2855958
Alignment:
| Q |
58 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
157 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| ||||| || |
|
|
| T |
2855815 |
gcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggc |
2855914 |
T |
|
| Q |
158 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2855915 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaa |
2855958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 2851720 - 2851790
Alignment:
| Q |
60 |
agctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatga |
130 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||||||||| |||| ||||||| |||||||| |
|
|
| T |
2851720 |
agctcagaaagtgatgaacttgaagaaaaatatggttcaaaggagcttcttgaattgtttgatgagaatga |
2851790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 10477734 - 10477878
Alignment:
| Q |
58 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
157 |
Q |
| |
|
||||||||||||| || |||||||| ||||| |||||||| || || |||| |||| ||||||| ||||||||||| ||||||| ||| ||||| || |
|
|
| T |
10477734 |
gcagctcagaaagtgatgaacttgatgaaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggc |
10477833 |
T |
|
| Q |
158 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaa |
202 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10477834 |
ttttgacgtttttgatgagaacaaagatggatttattgatgcaaa |
10477878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 8216104 - 8216243
Alignment:
| Q |
58 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
157 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| | || || |
|
|
| T |
8216104 |
gcagcttagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtttagatggc |
8216203 |
T |
|
| Q |
158 |
ttttgatgtttttgatgagaacaaagatggttttattgat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8216204 |
ttttgatgtttttgatgagaacaaagatggttttattgat |
8216243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University