View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14155_low_3 (Length: 608)
Name: NF14155_low_3
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 53556606 - 53556011
Alignment:
| Q |
1 |
ccattagtttaatacttgatgaacatgatgctacaatagtatttgatcaaaagaaccctccatcctcttactttgtcggcattatccttgaaaatgttcc |
100 |
Q |
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| T |
53556606 |
ccattagtttaatacttgatgaacatgatgctacaatagtatttgatcaaaagaaccctccatcctcttactttgtcggcattatccttgaaaatgttcc |
53556507 |
T |
|
| Q |
101 |
attttaattagttatatattttttgtattgatagaaaatgtacgatttaatggaaaaacttatgtgagttaggtcttaaacatcaatgtctaaaggttca |
200 |
Q |
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| T |
53556506 |
attttaattagttatatattttttgtattgatagaaaatgtacgatttaatggaaaaacttatgtgagttaggtcttaaacatcaatgtctaaaggttcg |
53556407 |
T |
|
| Q |
201 |
aagagatttgaaacttaccctctaaaatagagctccataattacctagaaaataatggaagattcacatgatacgatgggaaagattaagctgaacaaga |
300 |
Q |
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| T |
53556406 |
aagagatttgaaatttaccctctaaaatagagctccataattacctagaaaataatagaagattcacatgatacgatgggaaagattaagctgaacaaga |
53556307 |
T |
|
| Q |
301 |
ttaattaagcagggaattaaaatgaacattattagaaacttcttctgcnnnnnnnnnnnnttggatttgtgttgactaaggatcagcaggtgatgaaaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53556306 |
ttaattaagcagggaattaaaatgaacattattagaaac---ttctgcgtgtgtgtgtgtttggatttgtgttgactaaggatcagcaggtgatgaaaga |
53556210 |
T |
|
| Q |
401 |
tagaaaaactggcttagagtcaatggccttgaaattgtgtctgtcc--nnnnnnngttttcagtctccacaaaatcataaccaactgattcttatttgaa |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53556209 |
tagaaaaactggcttagagtcaatggccttgaaattgtgtctgtcctttttttttgttttcagtctccacaaaatcataaccaactgattcttatttgaa |
53556110 |
T |
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| Q |
499 |
accacacaccaatgaaatctagcatcttatccgtcatgactaaattgtacgaattattaagttcatattct----tatgatgtcaagtgccatgtacctt |
594 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| |
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| T |
53556109 |
accacacaccaatgaaatctaccatcttatccgtcatgactaaattgtacgaa--attaagttcatattcttatatatgatgtcaagagccatgtacctt |
53556012 |
T |
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