View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14155_low_4 (Length: 555)
Name: NF14155_low_4
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 538
Target Start/End: Complemental strand, 17472057 - 17471547
Alignment:
| Q |
12 |
gagaagtaatgtttaaattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatcaaca |
111 |
Q |
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| T |
17472057 |
gagaagtaatgttaaaattataaacaaatctctattaaatagtgcttaaaagcatgattgaagtttctttacacaaatactaatgcaagaacgatcatca |
17471958 |
T |
|
| Q |
112 |
cacatctatgaaacatttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccacttac |
211 |
Q |
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| T |
17471957 |
catatctatgaa-catttacacaaacatgaacatcaaaccaatactaacacgtcgacaccgtcaataatctaagaaaataaaatatttgaatccacttac |
17471859 |
T |
|
| Q |
212 |
catgtaacacttgagactactattttcatctaattgatttttactatatcatatcttcgtgattgaaaatatgatcttgatttaaaatatgctctctaac |
311 |
Q |
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| | | ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
17471858 |
cttattacacttgagactatgattttcaactaattgattttcactatatcatatcttcgtgattgaaaatatgatcgtgatttaaaatatgctccctaac |
17471759 |
T |
|
| Q |
312 |
aacctgaagagaaagnnnnnnnntggtgttaaagcttggaaggaacgtatgaaaaagaagaaggataaacaaatatgttcattttttcaggtttaactat |
411 |
Q |
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| T |
17471758 |
aacctgaagagaaa-aaaaaaaatggtgttaaagcttg------------gaaaaaaaagaaggacaaa-aaatatgttcattttttcaggtttaaccat |
17471673 |
T |
|
| Q |
412 |
gaaacaaattnnnnnnntgcaatgaaagttaatagcatttacacgccactaaaccatacattttttagtcagattttacattttaatcgcagaaaaataa |
511 |
Q |
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| T |
17471672 |
gaaacaaatt-aaaaaatgcaatgaaagttaatagcatttacacgccattaaaccattcattttttagtcataatttatgttttaatcacagaaaaataa |
17471574 |
T |
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| Q |
512 |
gaaggaatattctttgatgagagagat |
538 |
Q |
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| T |
17471573 |
ggaggaatattcttcgatgagagagat |
17471547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 538
Target Start/End: Original strand, 17581157 - 17581667
Alignment:
| Q |
12 |
gagaagtaatgtttaaattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatcaaca |
111 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || | ||||||||||||||| ||||||| || |
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| T |
17581157 |
gagaagtaatgttaaaattataaacaaatctctattaaatagtgcttaaaagcatgattgaagtttctttacacaaatactaatgcaagaacgatcatca |
17581256 |
T |
|
| Q |
112 |
cacatctatgaaacatttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccacttac |
211 |
Q |
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| T |
17581257 |
catatctatgaa-catttacacaaacatgaacatcaaaccaatactaacacgtcgacaccgtcaataatctaagaaaataaaatatttgaatccacttac |
17581355 |
T |
|
| Q |
212 |
catgtaacacttgagactactattttcatctaattgatttttactatatcatatcttcgtgattgaaaatatgatcttgatttaaaatatgctctctaac |
311 |
Q |
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| T |
17581356 |
cttattacacttgagactatgattttcaactaattgattttcactatatcatatcttcgtgattgaaaatatgatcgtgatttaaaatatgctccctaac |
17581455 |
T |
|
| Q |
312 |
aacctgaagagaaagnnnnnnnntggtgttaaagcttggaaggaacgtatgaaaaagaagaaggataaacaaatatgttcattttttcaggtttaactat |
411 |
Q |
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| T |
17581456 |
aacctgaagagaaa-aaaaaaaatggtgttaaagcttg------------gaaaaaaaagaaggacaaa-aaatatgttcattttttcaggtttaaccat |
17581541 |
T |
|
| Q |
412 |
gaaacaaattnnnnnnntgcaatgaaagttaatagcatttacacgccactaaaccatacattttttagtcagattttacattttaatcgcagaaaaataa |
511 |
Q |
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| T |
17581542 |
gaaacaaatt-aaaaaatgcaatgaaagttaatagcatttacacgccattaaaccattcattttttagtcataatttatgttttaatcacagaaaaataa |
17581640 |
T |
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| Q |
512 |
gaaggaatattctttgatgagagagat |
538 |
Q |
| |
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| T |
17581641 |
ggaggaatattcttcgatgagagagat |
17581667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 26 - 538
Target Start/End: Complemental strand, 43381452 - 43380952
Alignment:
| Q |
26 |
aaattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatcaacacacatctatgaaac |
125 |
Q |
| |
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||||||| |||||||||||||||||||||| |||| ||||||||||| | ||| ||||||||||| ||||||| | |||||||| || |
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| T |
43381452 |
aaattataaacaaatctctattaaatagtggttaa-----------aactttctgtacacaaacactaatgcaagaacgatcagatcgcatctatg-aat |
43381365 |
T |
|
| Q |
126 |
atttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccacttaccatgtaacacttga |
225 |
Q |
| |
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||||||| ||| | || | ||| |||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||| |
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| T |
43381364 |
atttacacaaatacgggtttcaaaccaatactaacacgttgacactgtcaataatctaagaaaataaaatatttgaatccacttaccttgttacacttga |
43381265 |
T |
|
| Q |
226 |
gactactattttcatctaattgatttttactatatcatatcttcgtgattgaaaatatgatcttgatttaaaatatgctctctaacaacctgaagagaaa |
325 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
43381264 |
gactatgattttcatctaattgatttttactatatcatatctttatgattgaaaatatgatcgtgatttaaaatatgctccctaacaacctgaagagaaa |
43381165 |
T |
|
| Q |
326 |
gnnnnnnnntggtgttaaagcttggaaggaacgtatgaaaaagaagaaggataaacaaatatgttcattttttcaggtttaactatgaaacaaattnnnn |
425 |
Q |
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|||||||||| |||||||||||| |||| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
43381164 |
--aaaagaatggtgttaaaacttggaaggaacatatggaaaagaagaa-gataaaaaaatatgttcattttttcagatttaactatgaaacaaatt-aaa |
43381069 |
T |
|
| Q |
426 |
nnntgcaatgaaag----ttaatagcatttacacgccactaaaccatacattttttagtcagattttac-attttaatcgcagaaaaataagaaggaata |
520 |
Q |
| |
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||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||| |||||||| | ||||| |||||| |||| |
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| T |
43381068 |
atatgcaatgaaagttaattaatagcatttacacaccattaaaccattcattttttagtcaccatttacgtttttaatc-aaaaaaaaaaagaagaaata |
43380970 |
T |
|
| Q |
521 |
ttctttgatgagagagat |
538 |
Q |
| |
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|||||||||||||||||| |
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| T |
43380969 |
ttctttgatgagagagat |
43380952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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