View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14155_low_5 (Length: 547)
Name: NF14155_low_5
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 3778279 - 3778810
Alignment:
| Q |
1 |
attgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3778279 |
attgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagtt |
3778378 |
T |
|
| Q |
101 |
cttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3778379 |
cttggaatgtagaagaaaaaaaccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatc |
3778478 |
T |
|
| Q |
201 |
tgaatagggtcggtgtgatctttgtattcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagcgaagttcccatggcagaaagtgggaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
3778479 |
tgaatagggtcggtgtgatctttgtattcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagtgaagttcccatggcagaaagtgggaagt |
3778578 |
T |
|
| Q |
301 |
atacgaaagataagaggtttaagtcttttgctatttctaatgcatgacttgcaaaaggatcaacaaccaaagctgataccggtgtgcatgttgaagttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3778579 |
atacgaaagataagaggtttaagtcttttgctatttctaatgcatgacttgcaaaaggatcaacaaccaaagctgataccggtgtgcatgttgaagttga |
3778678 |
T |
|
| Q |
401 |
acacagtaacctcaacgagctacgaagagatggcatggattgaaccacggcgagttcaatttccaagacaacatggtgtggcaagtcttgtttgtttatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3778679 |
acacagtaacctcaacgagctacgaagagatggcatggattgaaccaccgcgagttcaatttccaagacaacatcgtgtggcaagtcttgtttgtttatt |
3778778 |
T |
|
| Q |
501 |
ggagggaggaaagtgcagtttatggatgaagg |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3778779 |
ggagggaggaaagtgcagtttatggatgaagg |
3778810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 26 - 532
Target Start/End: Complemental strand, 3707552 - 3707046
Alignment:
| Q |
26 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccg |
125 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | | |
|
|
| T |
3707552 |
ctgcaaggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaagagacaagttcttggaatgtagaagaaaaatactg |
3707453 |
T |
|
| Q |
126 |
taagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgt |
225 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| ||||||| ||| ||||||| | ||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3707452 |
taagcaacactagatcgatcatgaaaaaattcgggaggaagatctttgccgagaataggtagacatcccggaatctgaataaggtcagtgtgatctttgt |
3707353 |
T |
|
| Q |
226 |
attcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagcgaagttcccatggcagaaagtgggaagtatacgaaagataagaggtttaagtc |
325 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||| ||| || | |||||| |||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
3707352 |
attcacatgaaacttgtttatgcagtgtcggacaatagaagtgtaatgaagttatcatggcagaaagtgggaaatatacaaaagataagaggttcaagtc |
3707253 |
T |
|
| Q |
326 |
ttttgctatttctaatgcatgacttgcaaaaggatcaacaaccaaagctgataccggtgtgcatgttgaagttgaacacagtaacctcaacgagctacga |
425 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
3707252 |
tttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggtgtgcatgttgaagttgaacacagtaacctcaacgagttgcga |
3707153 |
T |
|
| Q |
426 |
agagatggcatggattgaaccacggcgagttcaatttccaagacaacatggtgtggcaagtcttgtttgtttattggagggaggaaagtgcagtttatgg |
525 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| | |||||| |||||| |||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
3707152 |
agagatggcatggattgaaccaccgcgagttcaatttccatgccaacatcgtgtgggaagtctagtttgtttattggagggaggaaactgcagcttatgg |
3707053 |
T |
|
| Q |
526 |
atgaagg |
532 |
Q |
| |
|
||||||| |
|
|
| T |
3707052 |
atgaagg |
3707046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 26 - 532
Target Start/End: Original strand, 3770643 - 3771149
Alignment:
| Q |
26 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccg |
125 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |
|
|
| T |
3770643 |
ctgcaaggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaagagacaagttcttggaatgtagaagaaaaaaactg |
3770742 |
T |
|
| Q |
126 |
taagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgt |
225 |
Q |
| |
|
||| | |||||||||||||||||||||||| ||||| |||||||||| | |||||| | ||||||||||| ||||||| |||| || |||||||||| |
|
|
| T |
3770743 |
taacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagacaacccggaaactgaataaggtcagtatgatctttgt |
3770842 |
T |
|
| Q |
226 |
attcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagcgaagttcccatggcagaaagtgggaagtatacgaaagataagaggtttaagtc |
325 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||| |||| ||| || |||||| ||||||||||||||| |||||||| |||||||||| ||| |||| |
|
|
| T |
3770843 |
attcacatgaaacttgttcatgcagtgccggaaaatacaagttgaatgaagttgtcatggcagaaagtggaaagtatacaaaagataagatgttctagtc |
3770942 |
T |
|
| Q |
326 |
ttttgctatttctaatgcatgacttgcaaaaggatcaacaaccaaagctgataccggtgtgcatgttgaagttgaacacagtaacctcaacgagctacga |
425 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||| ||| || |||| | |||||||| ||||||||| || ||| || | ||| |
|
|
| T |
3770943 |
ttttgctatttctaatgcttgacttgcataaggatcaacaaccaatgctaccactggtgaggatgttgaacttgaacacaaggacaacaatgacttgcga |
3771042 |
T |
|
| Q |
426 |
agagatggcatggattgaaccacggcgagttcaatttccaagacaacatggtgtggcaagtcttgtttgtttattggagggaggaaagtgcagtttatgg |
525 |
Q |
| |
|
| |||||||||||||||| || | | ||| ||||||||||||| || | |||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3771043 |
aaagatggcatggattgagccgtcgtcaattcgatttccaagacaaaatcgcgtggtaagtcttgtttgttaattggagggaggaaagtgcagtttatgg |
3771142 |
T |
|
| Q |
526 |
atgaagg |
532 |
Q |
| |
|
||||||| |
|
|
| T |
3771143 |
atgaagg |
3771149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 529
Target Start/End: Complemental strand, 3719061 - 3718558
Alignment:
| Q |
26 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccg |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||| |
|
|
| T |
3719061 |
ctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagacgagtttttgcaatgttgaagaaaaagctta |
3718962 |
T |
|
| Q |
126 |
taagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgt |
225 |
Q |
| |
|
|||| | | ||| ||||||||||||||||| ||||| ||||||||||| ||||||| | |||||| |||||||||||||| || |||||||||||| |
|
|
| T |
3718961 |
taaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggcctcgaataggtagacaacctggaatctgaataggatcaatgtgatctttgt |
3718862 |
T |
|
| Q |
226 |
attcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagcgaagttcccatggcagaaagtgggaagtatacgaaagataagaggtttaagtc |
325 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||| ||| || |||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
3718861 |
attcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcagaaagtgggaagtatataaaagataagaggttcaagtc |
3718762 |
T |
|
| Q |
326 |
ttttgctatttctaatgcatgacttgcaaaaggatcaacaaccaaagctgataccggtgtgcatgttgaagttgaacacagtaacctcaacgagctacga |
425 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||| |||||||||||| || | ||| |
|
|
| T |
3718761 |
tttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggtgtgcatgttgaaattgaacaaagtaacctcaacaagttccga |
3718662 |
T |
|
| Q |
426 |
agagatggcatggattgaaccacggcgagttcaatttccaagacaacatggtgtggcaagtcttgtttgtttattggagggaggaaagtgcagtttatgg |
525 |
Q |
| |
|
||| |||||||||||||| | || | || ||||| | || || ||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3718661 |
agacatggcatggattgagcggtcgccaaatcgttttccccaataaaatcctgtggtaagtcttgtttgtttattggagggaggaaagtgcattttatgg |
3718562 |
T |
|
| Q |
526 |
atga |
529 |
Q |
| |
|
|||| |
|
|
| T |
3718561 |
atga |
3718558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 30 - 532
Target Start/End: Original strand, 33005538 - 33006037
Alignment:
| Q |
30 |
aaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccgtaag |
129 |
Q |
| |
|
||||||||| |||| ||| ||||||||| |||||| ||||| | ||| | ||||| ||||||||| || |||||| ||| |||| |||||| |
|
|
| T |
33005538 |
aaggctctcactgtgctttcctccatttctgagaagctattaatcaatacaccatcagcaagagagaatctcttggtttgtcgaagaattgtctcgtaag |
33005637 |
T |
|
| Q |
130 |
caggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgtattc |
229 |
Q |
| |
|
|| |||||| ||||| | |||||| | |||||||||||||||| ||||||| | ||||||||||| | |||||| || |||||| |||| || |
|
|
| T |
33005638 |
caatactagaccgatcttcaaaaaaagtacgagggagatcttggccgcgaataggtgtgcaacccggaatttcaataggttcaacgtgatccatgtactc |
33005737 |
T |
|
| Q |
230 |
acctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagcgaagttcccatggcagaaagtgggaagtatacgaaagataagaggtttaagtctttt |
329 |
Q |
| |
|
||| ||||||||||| | |||| | || |||||||| || |||||| ||||||||||| |||||||| | ||||||||||| ||| || ||||| |
|
|
| T |
33005738 |
acccgaaacttgttcgtcaagtattggcaaatgcaagtgtagtgaagttgtcatggcagaaacagggaagtacatgaaagataagatgttgaactctttc |
33005837 |
T |
|
| Q |
330 |
gctatttctaatgcatgacttgcaaaaggatcaacaaccaaagctgataccggtgtgcatgttgaagttgaacacagtaacctcaacgagctacgaagag |
429 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| | ||| ||||||||| |||||||||||||| || || |||||||| |||| || |
|
|
| T |
33005838 |
gctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtg---gttgaagttgaacaaagcaaactcaacgattcgcgaaaag |
33005934 |
T |
|
| Q |
430 |
atggcatggattgaaccacggcgagttcaatttccaagacaacatggtgtggcaagtcttgtttgtttattggagggaggaaagtgcagtttatggatga |
529 |
Q |
| |
|
|||||||||||| | || | ||||||| || || | ||| | ||||| | ||||||||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33005935 |
atggcatggatttagtaacaccaagttcaagttgcatggtaacttcttgtggtaggtcttgtttttttattggagggaggaaagtgcagtgtatggttga |
33006034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 134 - 343
Target Start/End: Complemental strand, 3700769 - 3700557
Alignment:
| Q |
134 |
actagatcgatcatgaaaaaattcaggagggagatcttggccatgaataggga---tacaacccggaatctgaatagggtcggtgtgatctttgtattca |
230 |
Q |
| |
|
|||||| ||||| |||| ||| | |||| ||||||||||||||||||||| | | || || || | ||||||||| || ||||||||||||||||| |
|
|
| T |
3700769 |
actagaccgatcgtgaagaaaattaggaatgagatcttggccatgaataggtacgttgcagccggggaactgaataggctcaatgtgatctttgtattca |
3700670 |
T |
|
| Q |
231 |
cctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagcgaagttcccatggcagaaagtgggaagtatacgaaagataagaggtttaagtcttttg |
330 |
Q |
| |
|
| |||| || ||| || ||||| || ||||| | || | || || |||||||||||||||| ||||||| ||||||||||||||| || ||||||| |
|
|
| T |
3700669 |
cacgaaaatttttcgtgcagtgttggcaaatgtgacaacaaagacattgccatggcagaaagtggaaagtatatgaaagataagaggttgaactcttttg |
3700570 |
T |
|
| Q |
331 |
ctatttctaatgc |
343 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3700569 |
ctatttctaatgc |
3700557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 3700412 - 3700365
Alignment:
| Q |
485 |
gtcttgtttgtttattggagggaggaaagtgcagtttatggatgaagg |
532 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
3700412 |
gtcttgtatgttaactggagggaggaaagtgcagtttattgatgaagg |
3700365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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