View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14155_low_6 (Length: 532)

Name: NF14155_low_6
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14155_low_6
NF14155_low_6
[»] chr1 (4 HSPs)
chr1 (21-515)||(4366812-4367291)
chr1 (347-502)||(17561085-17561241)
chr1 (444-493)||(39379409-39379458)
chr1 (230-274)||(39379601-39379645)
[»] chr7 (20 HSPs)
chr7 (340-493)||(29431340-29431496)
chr7 (340-502)||(29454436-29454601)
chr7 (179-285)||(29873918-29874024)
chr7 (347-503)||(29898953-29899109)
chr7 (418-477)||(29859101-29859160)
chr7 (340-496)||(29895044-29895197)
chr7 (339-403)||(29922425-29922489)
chr7 (179-274)||(29858859-29858954)
chr7 (229-274)||(29894951-29894996)
chr7 (455-503)||(29884953-29885001)
chr7 (215-274)||(29106273-29106332)
chr7 (229-274)||(29074552-29074597)
chr7 (215-274)||(29898833-29898892)
chr7 (64-118)||(29431731-29431785)
chr7 (444-481)||(15572249-15572286)
chr7 (446-490)||(19637571-19637615)
chr7 (444-484)||(22021065-22021105)
chr7 (347-391)||(22088208-22088252)
chr7 (434-498)||(29445984-29446048)
chr7 (242-274)||(29884761-29884793)
[»] chr4 (2 HSPs)
chr4 (446-494)||(3561305-3561353)
chr4 (224-274)||(11849206-11849256)
[»] chr2 (2 HSPs)
chr2 (447-489)||(18921079-18921121)
chr2 (449-489)||(18909152-18909192)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 21 - 515
Target Start/End: Complemental strand, 4367291 - 4366812
Alignment:
Q  21 caggcgattcctcggatggcagtgacgatgtacctgggctggattgcagtgtcgttccttactccatgcaccatttaattgagaatccgtcattcacctt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367291 caggcgattcctcggatggcagtgacgatgtacctgggctggattgcagcatcgttccttactccatgcaccatttaattgagaatccgtcattcacctt 4367192  T
Q  121 ttccatcgacccttactatcatttggtcaacaaagattgctatcgtatggttggcacatgcaatggattgatctgtttgagtgattattctgtgaccgat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367191 ttccatcgacccttactatcatttggtcaacaaagattgctatcgtatggttggcacatgcaatggattgatctgtttgagtgattattctgtgaccgat 4367092  T
Q  221 gaatatagagagtactggtttcgtttatggaacccagcaaccaggacaacatctgcgatatttggtcgttttcaagattttcgaaactctccacctgaaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  4367091 gaatatagagagtactggtttcgtttatggaacccagcaaccaggacaacatctgcgatatttggtcgttttcaagatt---------------ctgaaa 4367007  T
Q  321 ctttcagctatcatggcaatttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagag 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367006 ctttcagctatcatggcaatttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagag 4366907  T
Q  421 aagcattgtgaggattctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggactttggggaatatt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366906 aagcattgtgaggattctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggactttggggaatatt 4366812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 502
Target Start/End: Complemental strand, 17561241 - 17561085
Alignment:
Q  347 ttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgaggattct-aagtgtg 445  Q
    ||||| ||||||||||| | ||| || || | ||||||||| ||||  || |||||| |||||  ||||  ||| |||| |||||| ||| | |||| ||    
T  17561241 ttcaactttggttgtgatacttccaccgacatttataaggtagtggcttcacgttacaatccatgtcaaaggagtagcaatgtgagaatttttaagtttg 17561142  T
Q  446 ggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggac 502  Q
    |||||||||||||||||||||||| ||||||| ||  ||||||||||| ||||||||    
T  17561141 ggtgataacgtttggagagatattcaaagtttcccggttgttcctcttgatttggac 17561085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 39379458 - 39379409
Alignment:
Q  444 tgggtgataacgtttggagagatattgaaagttttcctattgttcctctt 493  Q
    |||||||||| ||||||||| ||||||||||||| ||  |||||||||||    
T  39379458 tgggtgataatgtttggagaaatattgaaagtttcccggttgttcctctt 39379409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 39379645 - 39379601
Alignment:
Q  230 gagtactggtttcgtttatggaacccagcaaccaggacaacatct 274  Q
    ||||||||||| ||||||||||||||||| || |||| |||||||    
T  39379645 gagtactggttccgtttatggaacccagccactaggaaaacatct 39379601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 340 - 493
Target Start/End: Complemental strand, 29431496 - 29431340
Alignment:
Q  340 tttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaa---tcaacagagaagcattgtgaggatt 436  Q
    |||||| || || ||||||| ||||||| |||| || |||||||||||||||| |||||||||| |||||||   | ||| |||||||| ||| |  |||    
T  29431496 tttcaagtttaactttggttttgacaatgcaaccgacacttataaggtggtggcgtcccgttacaatccaaaagatgaactgagaagcaatgtcaaaatt 29431397  T
Q  437 ctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctctt 493  Q
     ||||| || ||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  29431396 ttaagtttgagtgataatgtttggagagatattgaaagtttccctgttgttcctctt 29431340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 502
Target Start/End: Complemental strand, 29454601 - 29454436
Alignment:
Q  340 tttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacag---agaagcattgtgaggatt 436  Q
    |||||| ||||| ||||| | |||||||||||||||||| || || | ||||| |||||||||| ||||| | || ||    ||||||| ||| |  |||    
T  29454601 tttcaagttcaactttggctatgacaattcaactgatacctagaaagcggtggcgtcccgttacgatccagaacatcactgcagaagcaatgtcaaaatt 29454502  T
Q  437 ctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggac 502  Q
    |||||| ||  |||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  29454501 ctaagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcctcttcatttggac 29454436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 29873918 - 29874024
Alignment:
Q  179 tgcaatggattgatctgtttgagtgattattctgtgaccgatgaatatagagagtactggtttcgtttatggaacccagcaaccaggacaacatctgcga 278  Q
    |||||||||||||||||||||| ||||| |||  | ||| ||||| ||| |||||||||| || |||||||||||||||| ||||||| ||||||| | |    
T  29873918 tgcaatggattgatctgtttgactgattgttccttcacctatgaagataaagagtactggctttgtttatggaacccagccaccaggataacatctccaa 29874017  T
Q  279 tatttgg 285  Q
    |||||||    
T  29874018 tatttgg 29874024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 503
Target Start/End: Original strand, 29898953 - 29899109
Alignment:
Q  347 ttcaagtttggttgtgacaattcaa-ctgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgaggattctaagtgtg 445  Q
    ||||| ||||||| ||||||||||| | || ||||||||||||||||  | ||||||| |||||  || |  |||||||| |||||  ||||| ||| |     
T  29898953 ttcaaatttggttttgacaattcaaacaga-acttataaggtggtggcataccgttacaatccagttcgattgagaagcaatgtgaaaattctcagtttt 29899051  T
Q  446 ggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggact 503  Q
    |||||||| ||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  29899052 ggtgataatgtttggagagatattgaaagtttcccagttgttcctcttcattcggact 29899109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 29859101 - 29859160
Alignment:
Q  418 gagaagcattgtgaggattctaagtgtgggtgataacgtttggagagatattgaaagttt 477  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  29859101 gagaagcaatgtgagaattctaagtttgggtgataacgtttggagagatattgaaagttt 29859160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 496
Target Start/End: Original strand, 29895044 - 29895197
Alignment:
Q  340 tttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgaggattcta 439  Q
    |||||| |||| |||||||| |||||||||||| |  |||||||||||||||| ||   ||| | |||||  | || ||||||||||||| || ||||||    
T  29895044 tttcaagttcaggtttggttatgacaattcaaccggcacttataaggtggtggcgtattgttgcaatccacttgaaaagagaagcattgtcagaattcta 29895143  T
Q  440 agtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcat 496  Q
    | |||||||   ||| |||||||||||||||||||||| |||  ||| |||||||||    
T  29895144 actgtgggt---aacttttggagagatattgaaagtttccctgctgtccctcttcat 29895197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 29922489 - 29922425
Alignment:
Q  339 atttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttac 403  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||| ||| || |||||||    
T  29922489 atttcaatttcaaatttggttttgacaattcaactgatacttataaggtgttggcgttccgttac 29922425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 29858859 - 29858954
Alignment:
Q  179 tgcaatggattgatctgtttgagtgattattctgtgaccgatgaatatagagagtactggtttcgtttatggaacccagcaaccaggacaacatct 274  Q
    |||||||| ||||| ||||||| |||| ||||| | | || ||| ||| |||| |||||||| ||||||||||||||||| || ||||||||||||    
T  29858859 tgcaatgggttgatttgtttgactgatgattctttcaacggtgagtatcgagattactggttccgtttatggaacccagccacaaggacaacatct 29858954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 29894951 - 29894996
Alignment:
Q  229 agagtactggtttcgtttatggaacccagcaaccaggacaacatct 274  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||    
T  29894951 agagtactggtttcgtttatcgaacccagccaccaggacaacatct 29894996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 503
Target Start/End: Original strand, 29884953 - 29885001
Alignment:
Q  455 gtttggagagatattgaaagttttcctattgttcctcttcatttggact 503  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  29884953 gtttggagagatattgaaagttttccagttgttcctcttcatctggact 29885001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 29106273 - 29106332
Alignment:
Q  215 accgatgaatatagagagtactggtttcgtttatggaacccagcaaccaggacaacatct 274  Q
    ||||| || |||| |||||||||| | ||||||||||||||||| |||||||||||||||    
T  29106273 accgacgattatatagagtactggctccgtttatggaacccagccaccaggacaacatct 29106332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 29074552 - 29074597
Alignment:
Q  229 agagtactggtttcgtttatggaacccagcaaccaggacaacatct 274  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||    
T  29074552 agagtactggctccgtttatggaacccagccaccaggacaacatct 29074597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 29898833 - 29898892
Alignment:
Q  215 accgatgaatatagagagtactggtttcgtttatggaacccagcaaccaggacaacatct 274  Q
    ||||||||||||  ||||||||   | ||||||||||||||||| |||||||||||||||    
T  29898833 accgatgaatatctagagtactatctccgtttatggaacccagccaccaggacaacatct 29898892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 29431785 - 29431731
Alignment:
Q  64 ttgcagtgtcgttccttactccatgcaccatttaattgagaatccgtcattcacc 118  Q
    ||||||||| ||||| |||||||||| || |||||||||||| || |||||||||    
T  29431785 ttgcagtgttgttccctactccatgccccgtttaattgagaacccttcattcacc 29431731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 481
Target Start/End: Complemental strand, 15572286 - 15572249
Alignment:
Q  444 tgggtgataacgtttggagagatattgaaagttttcct 481  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  15572286 tgggtgataacgtttggagagatattgattgttttcct 15572249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 19637615 - 19637571
Alignment:
Q  446 ggtgataacgtttggagagatattgaaagttttcctattgttcct 490  Q
    |||||||| ||||||||| ||||| ||||||||||||| ||||||    
T  19637615 ggtgataaagtttggagaaatattcaaagttttcctatggttcct 19637571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 22021065 - 22021105
Alignment:
Q  444 tgggtgataacgtttggagagatattgaaagttttcctatt 484  Q
    |||| ||||| ||||||||| ||||||||||||||||||||    
T  22021065 tgggcgataatgtttggagaaatattgaaagttttcctatt 22021105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 22088208 - 22088252
Alignment:
Q  347 ttcaagtttggttgtgacaattcaactgatacttataaggtggtg 391  Q
    ||||||||||||| ||| |||||||| || |||||||||||||||    
T  22088208 ttcaagtttggttatgataattcaacagaaacttataaggtggtg 22088252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 29446048 - 29445984
Alignment:
Q  434 attctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcattt 498  Q
    ||||||||| | |||||||| ||||||||| | ||| ||||||| ||  ||||||||||||||||    
T  29446048 attctaagtataggtgataatgtttggagacagattcaaagtttccccgttgttcctcttcattt 29445984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 29884761 - 29884793
Alignment:
Q  242 cgtttatggaacccagcaaccaggacaacatct 274  Q
    ||||||||||||||||| |||||||||||||||    
T  29884761 cgtttatggaacccagccaccaggacaacatct 29884793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 3561353 - 3561305
Alignment:
Q  446 ggtgataacgtttggagagatattgaaagttttcctattgttcctcttc 494  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  3561353 ggtgataatgtttggagaaatattgaaagttttcctattgttcctcttc 3561305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 11849256 - 11849206
Alignment:
Q  224 tatagagagtactggtttcgtttatggaacccagcaaccaggacaacatct 274  Q
    |||| |||||||||| | ||||||||||||||||| |||||||||||||||    
T  11849256 tatacagagtactggctccgtttatggaacccagccaccaggacaacatct 11849206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Complemental strand, 18921121 - 18921079
Alignment:
Q  447 gtgataacgtttggagagatattgaaagttttcctattgttcc 489  Q
    ||||||| |||||||| |||||| |||||||||||||||||||    
T  18921121 gtgataatgtttggagggatattcaaagttttcctattgttcc 18921079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 18909192 - 18909152
Alignment:
Q  449 gataacgtttggagagatattgaaagttttcctattgttcc 489  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  18909192 gataatgtttggagagatattccaagttttcctattgttcc 18909152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University