View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14155_low_7 (Length: 474)

Name: NF14155_low_7
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14155_low_7
NF14155_low_7
[»] chr8 (9 HSPs)
chr8 (11-458)||(2054138-2054585)
chr8 (92-385)||(2032964-2033258)
chr8 (255-454)||(2046327-2046526)
chr8 (255-454)||(2036950-2037149)
chr8 (250-454)||(2050136-2050337)
chr8 (202-379)||(1950385-1950559)
chr8 (270-385)||(2057168-2057280)
chr8 (250-403)||(2028410-2028560)
chr8 (254-442)||(10767546-10767731)
[»] chr7 (1 HSPs)
chr7 (81-136)||(6745823-6745878)
[»] chr4 (1 HSPs)
chr4 (250-343)||(48908694-48908784)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 2054585 - 2054138
Alignment:
Q  11 caaaggcgactagagttttattagaatgagcaaaaagttcataatgcaaatattactctaattcgaatactaaacaaactaaactacccttagccgaatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  2054585 caaaggcgactagagttttattagaatgagcaaaaagttcataatgcaaatattactctaattcgaataataaataaactaaactacccttagccgaatt 2054486  T
Q  111 ataacaaaaggcccattacatattatttaacagacacaaacatgtgtaatacactcaacgcgcatccaatcggaaatttcagtgctacaaatgataataa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2054485 ataacaaaaggcccattacatattatttaacagacacaaacatgtgtaatacactcaacgcgcatccaatctgaaatttcagtgctacaaatgataataa 2054386  T
Q  211 caaaatatcaaggagcaaataaattttatagatgtacataaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagtt 310  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2054385 caaaatatcaaggagcaaataaattttacagatgtacataaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagtt 2054286  T
Q  311 acaaccaaaactatccttccaattgagtgctggagagctataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtatagaaacnn 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  2054285 acaaccaaaactatccttccaattgagtgctggagagctataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtatagaaactt 2054186  T
Q  411 nnnnnggcttctgtatcctgttcataaaaccttttcaccccatcattc 458  Q
         |||||||||||||||||||||||||||||||||||||||||||    
T  2054185 tttttggcttctgtatcctgttcataaaaccttttcaccccatcattc 2054138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 92 - 385
Target Start/End: Complemental strand, 2033258 - 2032964
Alignment:
Q  92 aactacccttagccgaattataacaaaaggcccattacatattatttaa-cagacacaaacatgtgtaatacactcaacgcgcatccaatcggaaatttc 190  Q
    ||||||||||| |  ||||||||||||||  |||||||||||||||||| ||||||||||||  ||| | ||||||||||||||||||||| ||||||||    
T  2033258 aactacccttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgttagacactcaacgcgcatccaatctgaaatttc 2033159  T
Q  191 agtgctacaaatgataataacaaaatatcaaggagcaaataaattttatagatgtacataaacatacctgcataccacaggaaactcttctggtttgaga 290  Q
     ||||||||||||||||| || |||| ||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||| ||||||||||    
T  2033158 ggtgctacaaatgataatgaccaaatttcaaggagcaaataaattttacacatatgcataaacatacctgcataccacaggaaactcttgtggtttgaga 2033059  T
Q  291 gtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataaatatcaacattgctattgtaaataaaggatct 385  Q
    ||||||||||||||||||| |||   |||||||||| |||||||||||||||| |||||||||||||||| ||| ||||| |||| |||||||||    
T  2033058 gtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagctataaatatcaaaattactattataaacaaaggatct 2032964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 255 - 454
Target Start/End: Complemental strand, 2046526 - 2046327
Alignment:
Q  255 tacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataaa 354  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||  |||||||||||||||| | ||||||||    
T  2046526 tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2046427  T
Q  355 tatcaacattgctattgtaaataaaggatctctgcatatctcttgtatagaaacnnnnnnnggcttctgtatcctgttcataaaaccttttcaccccatc 454  Q
    |||||  |||||||||||||||||| ||||| | ||||||||||||||| |||        | ||||||| || ||||||||||||||||||||||||||    
T  2046426 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatcttttttgacttctgtgtcttgttcataaaaccttttcaccccatc 2046327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 255 - 454
Target Start/End: Complemental strand, 2037149 - 2036950
Alignment:
Q  255 tacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataaa 354  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||| ||||  |||||||||||||||| | ||||||||    
T  2037149 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2037050  T
Q  355 tatcaacattgctattgtaaataaaggatctctgcatatctcttgtatagaaacnnnnnnnggcttctgtatcctgttcataaaaccttttcaccccatc 454  Q
    |||||  |||||||||||||||||| ||||| | ||||||||||||||| |||        | ||||||| || ||||||||||||||||||||||||||    
T  2037049 tatcataattgctattgtaaataaaagatctattcatatctcttgtataaaaatcttttttgacttctgtgtcttgttcataaaaccttttcaccccatc 2036950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 250 - 454
Target Start/End: Complemental strand, 2050337 - 2050136
Alignment:
Q  250 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagct 349  Q
    ||||||||||||| ||  | ||||| |||||||||||| ||||||||||   |||||||| |||  ||||||||||| ||||||||||||| ||||||||    
T  2050337 aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcagg---agccaagtaacacgcaaaactatccctccaattgagtgccggagagct 2050241  T
Q  350 ataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtatagaaacnnnnnnnggcttctgtatcctgttcataaaaccttttcacc 449  Q
    ||||||||||| ||| ||||| |||| ||||||||| | ||||||||||||||| ||||       |||||||||| |||||||||||||||||||||||    
T  2050240 ataaatatcaaaattactattataaacaaaggatctattcatatctcttgtatacaaactttttttggcttctgtagcctgttcataaaaccttttcacc 2050141  T
Q  450 ccatc 454  Q
    |||||    
T  2050140 ccatc 2050136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 202 - 379
Target Start/End: Original strand, 1950385 - 1950559
Alignment:
Q  202 tgataataacaaaatatcaaggagcaaataaattttatagatgtacataaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtgg 301  Q
    |||||||||| |||| ||||||||||||||||||||| | || |||||| |||||||||||||| |||||||| |||| ||||||| ||||||||   ||    
T  1950385 tgataataaccaaatttcaaggagcaaataaattttacacatatacatatacatacctgcatacaacaggaaaatcttgtggtttgggagtatca---gg 1950481  T
Q  302 agccaagttacaaccaaaactatccttccaattgagtgctggagagctataaatatcaacattgctattgtaaataaa 379  Q
    |||||||| |||| || || ||||| |||||||||||||||| |||||||| | ||||| |||||| |||||||||||    
T  1950482 agccaagtaacaagcacaagtatccctccaattgagtgctggtgagctatacaaatcaaaattgcttttgtaaataaa 1950559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 385
Target Start/End: Complemental strand, 2057280 - 2057168
Alignment:
Q  270 ggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataaatatcaacattgctat 369  Q
    ||||| |||||||||||  ||||||||||   |||||||| ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  2057280 ggaaaatcttctggttttggagtatcagg---agccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctat 2057184  T
Q  370 tgtaaataaaggatct 385  Q
    |||||| |||||||||    
T  2057183 tgtaaacaaaggatct 2057168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 250 - 403
Target Start/End: Complemental strand, 2028560 - 2028410
Alignment:
Q  250 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagct 349  Q
    |||||||||||||||| |||||||| |||||||||||| ||||||||||   |||||||  ||||  | || ||||| |||||||||||||||| |||||    
T  2028560 aaacatacctgcatacaacaggaaaatcttctggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagct 2028464  T
Q  350 ataaatatcaacattgctattgtaaataaaggatctctgcatatctcttgtata 403  Q
    ||| | ||||| |||||| ||||||||||| ||||  |||| ||||||||||||    
T  2028463 atacaaatcaaaattgcttttgtaaataaatgatccatgcaaatctcttgtata 2028410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 442
Target Start/End: Complemental strand, 10767731 - 10767546
Alignment:
Q  254 atacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataa 353  Q
    |||||||||||| |||||||  |||||||||||| ||||||||||   |||||||| |||   |||| ||||| ||||||| |||||||| |||||||||    
T  10767731 atacctgcatactacaggaatatcttctggtttgggagtatcagg---agccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataa 10767635  T
Q  354 atatcaacattgctattgtaaataaaggatctctgcatatctcttgtatagaaacnnnnnnnggcttctgtatcctgttcataaaacct 442  Q
    |||||||  || |||||||||||||||||| | ||  ||||||||||||| |||        | ||||||||||||| |||||||||||    
T  10767634 atatcaaagttactattgtaaataaaggatttatgtctatctcttgtatacaaatcttttttgacttctgtatcctgctcataaaacct 10767546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 6745823 - 6745878
Alignment:
Q  81 taaacaaactaaactacccttagccgaattataacaaaaggcccattacatattat 136  Q
    |||| |||||||||||||||||||| |||||||||||||| | ||| |||||||||    
T  6745823 taaataaactaaactacccttagcccaattataacaaaagcctcataacatattat 6745878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 48908694 - 48908784
Alignment:
Q  250 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctgg 343  Q
    |||||||||||||||| | |||||| |||||||||||| ||||||||   |||||||||  ||||  |||| ||||| |||||||||| |||||    
T  48908694 aaacatacctgcatactagaggaaaatcttctggtttgggagtatca---ggagccaagaaacaaataaaagtatccctccaattgagcgctgg 48908784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University