View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14155_low_8 (Length: 439)
Name: NF14155_low_8
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 47257960 - 47257525
Alignment:
| Q |
1 |
tctccttcttagcagaagtatattattggaatctagtgatctcaaccacaatgcaatgcatgcacaatccaatgattatacaagtcagaatttacattct |
100 |
Q |
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| T |
47257960 |
tctccttcttagcagaagtatattattggaatctagtgatctcaaccacaatgcaatgcatgcacaatccaatgattatacaagtcagaatttacattct |
47257861 |
T |
|
| Q |
101 |
aataatttctcagatccatccaaattaacacctattctcnnnnnnng-ggtacaaaattaacacctattctacaaatccaacattaacatagtttgttga |
199 |
Q |
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| T |
47257860 |
aataatatctcagatccatccaaattaacacctattctctttttttttggtacaaaattaacacctattctacaaatccaacattaacatagtttgttga |
47257761 |
T |
|
| Q |
200 |
aataattaaaaacaaat---------taacaaaataaacaaccttatttcaaaaccccgaggatcaaacttgaactgcataatctttgaactttgtttga |
290 |
Q |
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| T |
47257760 |
aataattaaaaacaaataaaacaaattaacaaaataaacaaccttatttcaaaaccctgaggatcaaacttgaactgcataatctttgaactttgtttga |
47257661 |
T |
|
| Q |
291 |
aatttacctctctaatattttgcccttcttgagtggaaatagtggaggcaaagcactgtttttcatctgtgtacaaattggcacattaatcattggtcta |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47257660 |
aatttacctctctaatattttgcccttcttgagtggaaatagtggaggcaaagcactgtttttcatctgtgtacaaattggcacattaatcattggtcta |
47257561 |
T |
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| Q |
391 |
attctaatagtagctgatcttgttctctccaaccct |
426 |
Q |
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| T |
47257560 |
attctaatagtagctgatcttgttctctccaaccct |
47257525 |
T |
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