View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14155_low_9 (Length: 435)
Name: NF14155_low_9
Description: NF14155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14155_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Original strand, 45024860 - 45025286
Alignment:
| Q |
16 |
atcccaccaattttcctgaccacaaaattcaccaaggtctaatattttacaaaaataaaatttggcttaacacttcaaacccatacaaaatcaaactcct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45024860 |
atcccaccaattttcctgaccacaaaattcaccagggtataatattttacaaaaacaaaatttggcttaacacttcaaacccatacaaaatcaaactcct |
45024959 |
T |
|
| Q |
116 |
caacgaattccacaactccccaattagcggtcacatgggttttcaaaagacatacatacgcctccgagacaatttctattggaccggtatgtgtgaagat |
215 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45024960 |
caacgaattccacaactcccccatcagcggtcacatgggttttcaaaagacatacatacgcctccgagacaatttctattggaccggtatgtgtgaagat |
45025059 |
T |
|
| Q |
216 |
tgcaaaaattttgtgtcccaatgcctcccttgccaaaccaccaaatacaaaacaaaacgccccgctggcct-------------------cctacagcca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
45025060 |
tgcaaaaattttgtgtcccaatgcctcccttgccaaaccaccaaatacgaaacaaaacgccccgctggcctcctacaacccttacctttacctacagcca |
45025159 |
T |
|
| Q |
297 |
tattggaagatcttttcctagacttcatcaccggcctacccccttcccatggtttcactgtcattcttgtaattgtggacagcttttccaaaggagcaca |
396 |
Q |
| |
|
||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45025160 |
tatggaaagatctttccctagacttcatcaccggcctacccccttcccatggtttcactgtcattcttgtaattgtggacaacttttccaaaggagcaca |
45025259 |
T |
|
| Q |
397 |
tttcgcagctcttcctactcacttaat |
423 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
45025260 |
tttcgcagctctttctactcacttaat |
45025286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 289
Target Start/End: Original strand, 22261402 - 22261652
Alignment:
| Q |
39 |
aaaattcaccaaggtctaatattttacaaaaataaaatttggcttaacacttcaaacccatacaaaatcaaactcctcaacgaattccacaactccccaa |
138 |
Q |
| |
|
|||||||||||||| || || ||||||||||| ||||||||||| || | || | | | |||| |||| | ||| | |||||||||||||| | | |
|
|
| T |
22261402 |
aaaattcaccaaggcctcatcttttacaaaaacaaaatttggctcaattcatccagtactttcaaagacaaaattctccatgaattccacaactcttcca |
22261501 |
T |
|
| Q |
139 |
ttagcggtcacatgggttttcaaaagacatacatacgcctccgagacaatttctattggaccggtatgtgtgaagattgcaaaaattttgtgtcccaatg |
238 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| || || || |||||||| ||||||| ||||||| |||| ||| ||| | ||||| ||||||| |
|
|
| T |
22261502 |
ttagcggccacatgggtttccaaaaaacatacatccggcttcgtgacaatttttattggaacggtatgcgtgaggatgtcaagacatttgtaacccaatg |
22261601 |
T |
|
| Q |
239 |
cctcccttgccaaaccaccaaatacaaaacaaaacgccccgctggcctcct |
289 |
Q |
| |
|
|| |||||||| ||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
22261602 |
cccaatttgccaaatcaccaaatatgaaaccaaacggccagctggcctcct |
22261652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 393
Target Start/End: Original strand, 22261672 - 22261775
Alignment:
| Q |
290 |
acagccatattggaagatcttttcctagacttcatcaccggcctacccccttcccatggtttcactgtcattcttgtaattgtggacagcttttccaaag |
389 |
Q |
| |
|
|||||| ||| |||||| || | | |||||||||| |||||||| || ||||| | ||||||| ||| ||| | ||| |||| |||||||||||||||| |
|
|
| T |
22261672 |
acagccgtatgggaagacctctccttagacttcattaccggccttccaccttcaaacggtttcagtgttattttggtagttgttgacagcttttccaaag |
22261771 |
T |
|
| Q |
390 |
gagc |
393 |
Q |
| |
|
|||| |
|
|
| T |
22261772 |
gagc |
22261775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 289
Target Start/End: Complemental strand, 35068825 - 35068575
Alignment:
| Q |
39 |
aaaattcaccaaggtctaatattttacaaaaataaaatttggcttaacacttcaaacccatacaaaatcaaactcctcaacgaattccacaactccccaa |
138 |
Q |
| |
|
||||| |||||||| || || ||||||||||| ||||||||||| || | |||| | | |||| |||| | ||| | |||||||||||||| || | |
|
|
| T |
35068825 |
aaaatacaccaaggcctcatcttttacaaaaacaaaatttggctcaattcatcaagtactttcaaagacaaaattctccatgaattccacaactctccca |
35068726 |
T |
|
| Q |
139 |
ttagcggtcacatgggttttcaaaagacatacatacgcctccgagacaatttctattggaccggtatgtgtgaagattgcaaaaattttgtgtcccaatg |
238 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| || || || || ||||| ||||||| |||||| |||| ||| ||| | ||||| ||||||| |
|
|
| T |
35068725 |
ttagcggccacatgggtttccaaaaaacatacatccgacttcgtgataatttttattggaatggtatgcgtgaggatgtcaagacatttgtaacccaatg |
35068626 |
T |
|
| Q |
239 |
cctcccttgccaaaccaccaaatacaaaacaaaacgccccgctggcctcct |
289 |
Q |
| |
|
|| |||||||| ||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
35068625 |
cccaatttgccaaatcaccaaatatgaaaccaaacggccagctggcctcct |
35068575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University