View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14156_high_7 (Length: 332)

Name: NF14156_high_7
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14156_high_7
NF14156_high_7
[»] chr4 (1 HSPs)
chr4 (3-332)||(36915526-36915855)
[»] chr6 (1 HSPs)
chr6 (49-124)||(6079922-6079998)
[»] chr2 (1 HSPs)
chr2 (30-128)||(45329308-45329407)
[»] chr1 (3 HSPs)
chr1 (168-232)||(46105338-46105402)
chr1 (49-124)||(49350145-49350221)
chr1 (178-242)||(6307925-6307989)
[»] scaffold0279 (1 HSPs)
scaffold0279 (167-300)||(18554-18685)
[»] chr3 (2 HSPs)
chr3 (27-124)||(52136663-52136761)
chr3 (159-239)||(15325987-15326067)
[»] chr8 (2 HSPs)
chr8 (179-300)||(15218086-15218207)
chr8 (159-239)||(14772982-14773062)
[»] scaffold0073 (1 HSPs)
scaffold0073 (178-242)||(16224-16288)
[»] chr7 (1 HSPs)
chr7 (178-242)||(7039941-7040005)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 332
Target Start/End: Complemental strand, 36915855 - 36915526
Alignment:
Q  3 atccaatttatcaaccttattttgctagtgtactaaagcttaagatctgaactatctaattctttcacatttcctctcaaccacttagtttcttatagga 102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36915855 atccaatttatcaaccttactttgctagtgtactaaagcttaagatctgaactatctaattctttcacatttcctctcaaccacttggtttcttatagga 36915756  T
Q  103 catgaaattgatcctccccctaatcaaagttttcattgtttccatagannnnnnnataagtgtgcctatatttcttgttccaaaacaaattctactctca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  36915755 catgaaattgatcctccccctaatcaaagttttcattgtttccatagatttttttataagtgtgcctatatttcttgttccaaaacaaattctactctca 36915656  T
Q  203 tgaactaacttttttatccacgcctattcacaaagatgtgaggactctcgagtatttttcacggcatccaggtggcgatccaacgacccatgctcattaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36915655 tgaactaacttttttatccacgcctattcacaaagatgtgaggactctcgagtatttttcacggcatccaggtggcgatccaacgacccatgctcattaa 36915556  T
Q  303 tttgacattatactcaagctatacagtgtg 332  Q
    ||||||||||||||||||||||||||||||    
T  36915555 tttgacattatactcaagctatacagtgtg 36915526  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 6079998 - 6079922
Alignment:
Q  49 ctgaactatctaattctttcacatttcctctcaaccacttagtttcttatagg-acatgaaattgatcctcccccta 124  Q
    |||||||||||||||||||| | |||  || || |||||||||||||| |||| |||||||||||||||||| ||||    
T  6079998 ctgaactatctaattctttcgccttttttcccacccacttagtttcttgtaggcacatgaaattgatcctcctccta 6079922  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 45329308 - 45329407
Alignment:
Q  30 gtgtactaaagcttaagatctgaactatctaattctttcacatttcctctcaaccacttagtttcttatagg-acatgaaattgatcctccccctaatca 128  Q
    |||||| |||||||||   |||||||||||||||||||| | |||   |||| ||||||||| |||| |||| |||| ||||||||||||| ||||||||    
T  45329308 gtgtaccaaagcttaaatcctgaactatctaattctttcgcctttttcctcacccacttagtctcttgtaggcacataaaattgatcctcctcctaatca 45329407  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 46105402 - 46105338
Alignment:
Q  168 ctatatttcttgttccaaaacaaattctactctcatgaactaacttttttatccacgcctattca 232  Q
    ||||||||| ||||||||||| |||  ||  |||||||||||||||||||| |||| ||||||||    
T  46105402 ctatatttcatgttccaaaacgaatcatatgctcatgaactaacttttttacccacacctattca 46105338  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 49350145 - 49350221
Alignment:
Q  49 ctgaactatctaattctttcacatttcctctcaaccacttagtttcttatagg-acatgaaattgatcctcccccta 124  Q
    |||||||||||||||||||| | |||   | || |||||||||||||| |||| |||||||||||||||||| ||||    
T  49350145 ctgaactatctaattctttcgcctttttccccacccacttagtttcttgtaggcacatgaaattgatcctcctccta 49350221  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 6307989 - 6307925
Alignment:
Q  178 tgttccaaaacaaattctactctcatgaactaacttttttatccacgcctattcacaaagatgtg 242  Q
    ||||| |||||| || ||||| |||||||||||||| |||| |||| | | ||||||||||||||    
T  6307989 tgttcaaaaacatatcctactatcatgaactaacttctttacccacacttgttcacaaagatgtg 6307925  T

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Target: scaffold0279 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 18685 - 18554
Alignment:
Q  167 cctatatttcttgttccaaaacaaattctactctcatgaactaacttttttatccacgcctattcacaaagatgtgaggactctcgagtatttttcacgg 266  Q
    |||||||| | ||||||||||||||| ||||||  |||||||| ||| |||| |||| ||  ||||  |||||||| | ||||| |  ||||||||||      
T  18685 cctatattccgtgttccaaaacaaatcctactc--atgaactagcttctttacccacacccgttcaagaagatgtgggaactcttgcttatttttcacta 18588  T
Q  267 catccaggtggcgatccaacgacccatgctcatt 300  Q
    |||||||| |||||| || || ||| ||||||||    
T  18587 catccaggcggcgatgcagcggcccttgctcatt 18554  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 52136761 - 52136663
Alignment:
Q  27 ctagtgtactaaagcttaagatctgaactatctaattctttcacatttcctctcaaccacttagtttcttatagg-acatgaaattgatcctcccccta 124  Q
    ||||| ||| |||||||||   || ||||||||||||||||| | |||  || || |||||||||||||| |||| | |||||||||||||||| ||||    
T  52136761 ctagtttaccaaagcttaaatccttaactatctaattctttcgctttttttcccacccacttagtttcttgtaggcatatgaaattgatcctcctccta 52136663  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 15326067 - 15325987
Alignment:
Q  159 taagtgtgcctatatttcttgttccaaaacaaattctactctcatgaactaacttttttatccacgcctattcacaaagat 239  Q
    |||| |||||| |||||| ||||| ||||||  | |||||||||||||||||||| |||| |||| |   |||||||||||    
T  15326067 taagggtgcctttatttcatgttctaaaacaggtcctactctcatgaactaacttctttacccacactcgttcacaaagat 15325987  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 15218086 - 15218207
Alignment:
Q  179 gttccaaaacaaattctactctcatgaactaacttttttatccacgcctattcacaaagatgtgaggactctcgagtatttttcacggcatccaggtggc 278  Q
    |||||||||| ||| |||||||||||||||| ||| |||| || | ||| ||||| |||||||| | || || |  ||||||||||  |||||||| |||    
T  15218086 gttccaaaacgaatcctactctcatgaactagcttctttacccgcacctgttcacgaagatgtgggaacccttgcttatttttcactacatccaggcggc 15218185  T
Q  279 gatccaacgacccatgctcatt 300  Q
     || || || ||| ||||||||    
T  15218186 aatgcagcggcccttgctcatt 15218207  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 14772982 - 14773062
Alignment:
Q  159 taagtgtgcctatatttcttgttccaaaacaaattctactctcatgaactaacttttttatccacgcctattcacaaagat 239  Q
    |||| |||||| |||||| ||||| ||||||  | |||||||||||||||||||| |||| |||| |   |||||||||||    
T  14772982 taagggtgcctttatttcatgttctaaaacaggtcctactctcatgaactaacttctttacccacactcgttcacaaagat 14773062  T

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Target: scaffold0073 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 16224 - 16288
Alignment:
Q  178 tgttccaaaacaaattctactctcatgaactaacttttttatccacgcctattcacaaagatgtg 242  Q
    ||||| |||||| || ||||| |||||||||||||| |||| |||| | | ||||||||||||||    
T  16224 tgttcaaaaacatatcctactatcatgaactaacttctttacccacacttgttcacaaagatgtg 16288  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 7039941 - 7040005
Alignment:
Q  178 tgttccaaaacaaattctactctcatgaactaacttttttatccacgcctattcacaaagatgtg 242  Q
    ||||| |||||| || ||||| |||||||||||||| |||| |||| | | ||||||||||||||    
T  7039941 tgttcaaaaacatatcctactatcatgaactaacttctttacccacacttgttcacaaagatgtg 7040005  T

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