View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14156_high_9 (Length: 239)
Name: NF14156_high_9
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14156_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45185011 - 45184785
Alignment:
| Q |
1 |
tcaatttactaaaaagattggctacaaactataagaaatgtcttatagatctatcaaaccaatttacttaagtaaatatgaataatattttttcactgtt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45185011 |
tcaatttactaaaaagatcggctacaaactataaaaaatgtcttatagttctatcaaaccgatttacttaagtaaatatgaataatattttttcactgtt |
45184912 |
T |
|
| Q |
101 |
attgttgttactattatcgatggttttgtacttcttatttaaattataattattcgataacttttcaataacttgagtttattaatctatatttgtgtct |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
45184911 |
attattgttactattatcgatggttttgtacttcttatttaaattataattattcgataacttttcaataacttgagtttattaatctatatttctttct |
45184812 |
T |
|
| Q |
201 |
ggcaattgaaggagtgattgatgtcct |
227 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
45184811 |
ggcaattgaatgagtgattgatgtcct |
45184785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 46351669 - 46351628
Alignment:
| Q |
51 |
ctatcaaaccaatttacttaagtaaatatgaataatattttt |
92 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
46351669 |
ctatcaaaccagtctacttaagttaatatgaataatattttt |
46351628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 36575343 - 36575380
Alignment:
| Q |
52 |
tatcaaaccaatttacttaagtaaatatgaataatatt |
89 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36575343 |
tatcaaaccaacctacttaagtaaatatgaataatatt |
36575380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University