View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14156_low_11 (Length: 219)
Name: NF14156_low_11
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14156_low_11 |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 16862701 - 16862510
Alignment:
| Q |
13 |
aagaatatcaaacaacatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
112 |
Q |
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| T |
16862701 |
aagaaaatcaaacaacataatagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
16862602 |
T |
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| Q |
113 |
gtgcacacaaagaatagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagatt |
204 |
Q |
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| T |
16862601 |
gtgcacacaaagaatagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagatt |
16862510 |
T |
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Target: scaffold0703 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 299 - 490
Alignment:
| Q |
13 |
aagaatatcaaacaacatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
299 |
aagaaaatcaaacaacatagtagtaaaatcattagcccgatgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
398 |
T |
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| Q |
113 |
gtgcacacaaagaatagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagatt |
204 |
Q |
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| T |
399 |
gtgcacacaaagaatagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatgatatacccctggtggtgagatt |
490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 12459407 - 12459598
Alignment:
| Q |
13 |
aagaatatcaaacaacatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
112 |
Q |
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| T |
12459407 |
aagaaaatcaaacaacatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
12459506 |
T |
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| Q |
113 |
gtgcacacaaagaatagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagatt |
204 |
Q |
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| T |
12459507 |
gtgcacacaaagaatagatgcatgtgtgattctgccaatgattcacacatcacacacgtatcatcgcatgatatacccctggtggtgagatt |
12459598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 14648081 - 14647890
Alignment:
| Q |
13 |
aagaatatcaaacaacatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
112 |
Q |
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||||| |||||||||||||| ||| ||||||||||| | || |||||||| ||||| || ||||||| |||| |||||||||| |||||||| || |
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| T |
14648081 |
aagaaaatcaaacaacatagaagtgaaatcattagcttgttggagcagctcacgaatttgatttcccatcccaatatgatcccaacattccatagccttg |
14647982 |
T |
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| Q |
113 |
gtgcacacaaagaatagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagatt |
204 |
Q |
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| T |
14647981 |
gaacaaacaaagaaaaggtgcatgtgaatttcagctagtgattcacacataacacacgaatcgtcacatggaatgcctctcgtgttgagatt |
14647890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 53986493 - 53986663
Alignment:
| Q |
13 |
aagaatatcaaacaacatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
112 |
Q |
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| T |
53986493 |
aagaaaatcaaacaacatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagcttta |
53986592 |
T |
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| Q |
113 |
gtgcacacaaagaatagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatgg |
183 |
Q |
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| T |
53986593 |
gtgcacacaaagaatagatgcatgtgtgattctgccaatgattcacacatcacacacatatcatcgcatgg |
53986663 |
T |
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