View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14156_low_13 (Length: 207)
Name: NF14156_low_13
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14156_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 1609051 - 1609241
Alignment:
| Q |
1 |
ctggtagggttttgtgagcattttgttcaagcatatagaagaaattttcttgtctgtactccatgtgcttttagtttgcaaattaagcaagagaaggaaa |
100 |
Q |
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| T |
1609051 |
ctggtagggttttgtgagcgttttgttcaagcatatagaagaaattttattgtacgtactccatgtgcttttagtttgcaaattaagcaagagaaggaaa |
1609150 |
T |
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| Q |
101 |
tatgtaggcgattttgacnnnnnnntgtgtcaacataagttcannnnnnnaaggggtcaacacacgctcatgtatataaattaattggtcata |
193 |
Q |
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| T |
1609151 |
tatgtaggcgattttga-taaaaattgtgtcaacataagttcatatttcgaa-gggtcaacacacgtttatgtatataaattaattggtcata |
1609241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 1614527 - 1614644
Alignment:
| Q |
1 |
ctggtagggttttgtgagcattttgttcaagcatatagaagaaattttcttgtctgtactccatgtgcttttagtttgcaaattaagcaagagaaggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1614527 |
ctggtagggttttgtgagcattttgttcaagcatatagaagaaattttattgtacgtactccatgtgcttttagtttgcaaattaagcaagagaaggaaa |
1614626 |
T |
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| Q |
101 |
tatgtaggcgattttgac |
118 |
Q |
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| T |
1614627 |
tatgtatgcgattttgac |
1614644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 1632535 - 1632652
Alignment:
| Q |
1 |
ctggtagggttttgtgagcattttgttcaagcatatagaagaaattttcttgtctgtactccatgtgcttttagtttgcaaattaagcaagagaaggaaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
1632535 |
ctggtagggttttgtgagcgttttgttcaagcatataggtgaaattttaatgtccgtactccatgtgcttttagtttgcaaattaagcaaaacaaggaaa |
1632634 |
T |
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| Q |
101 |
tatgtaggcgattttgac |
118 |
Q |
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| T |
1632635 |
tatgtaggcgattttgac |
1632652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 10818038 - 10817926
Alignment:
| Q |
1 |
ctggtagggttttgtgagcattttgttcaagcatatagaagaaattttcttgtctgtactccatgtgcttttagtttgcaaattaagcaagagaaggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10818038 |
ctggtagggttttgtgagcattttgttcaagcatatagaaaaaaaattcatta----actccatgtgcttttagtt-gcaaattaagcaagagaaggaaa |
10817944 |
T |
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| Q |
101 |
tatgtaggcgattttgac |
118 |
Q |
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| T |
10817943 |
tatgtaggcgattttgac |
10817926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 1632743 - 1632771
Alignment:
| Q |
151 |
aaggggtcaacacacgctcatgtatataa |
179 |
Q |
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| T |
1632743 |
aaggggtcaacacacgctcatgtatataa |
1632771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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