View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14156_low_2 (Length: 408)
Name: NF14156_low_2
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14156_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 28581876 - 28582246
Alignment:
| Q |
19 |
tgtacgtataggtgaaacgaaagaaaacaattattgttataataatagccttgtatatactgttatataatcatgaaggttttattcttgtcaacgaaat |
118 |
Q |
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| T |
28581876 |
tgtacatataggtgaagcgaaacacaacaattattgttataataatagccttgtatatattgttatataatcatgaaagttttattcatgtaaacgaaat |
28581975 |
T |
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| Q |
119 |
gagaaaggaaacataaagtattagttttgttacattgttaactagagttgatctttgcaaaatcaagagtcttctttccttcatgagcaacaccgtagaa |
218 |
Q |
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| T |
28581976 |
gagaaaggaaacataa-gtattagttat-----attgttaactagagttgatctttgcaaaattaagagtcttctttccttcatgagcaacaccgtagaa |
28582069 |
T |
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| Q |
219 |
gttgtccatgtaatcctgccacaagacttctctataaccagtcaatccatctttcttcaccaattcttgtaatgggccaatcctctctgtaaatctgggt |
318 |
Q |
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| T |
28582070 |
gttgtccatgtaatccttccacaagacttctctataaccagccaatccatctttcttcactaattctggtaatgggccaatcttctctgtaaatttgggt |
28582169 |
T |
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| Q |
319 |
agagtgaacaatggaactgatactctggattggttggaagttatcatgactcggtgttcagaactcttatacttccc |
395 |
Q |
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| T |
28582170 |
agagtaaacaatggaactgatactctggattggttcgaagttgtcatgactcggtgttcagaactcttgtatttccc |
28582246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 28566029 - 28566073
Alignment:
| Q |
155 |
gttaactagagttgatctttgcaaaatcaagagtcttctttcctt |
199 |
Q |
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| T |
28566029 |
gttaaccagagttgatctttgcaaaatcaagagtcttccttcctt |
28566073 |
T |
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