View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14156_low_3 (Length: 401)
Name: NF14156_low_3
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14156_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 38083337 - 38082943
Alignment:
| Q |
1 |
cagcagttttcgcaggaatatcctttcaataaacacaaacatatgtcaagtttaacaccaaactttagtaatttattcaagtatcattgttttaagtaaa |
100 |
Q |
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| T |
38083337 |
cagcagttttcgcaggaatatcctttcaataaacacaaatatatgtcaagtttaacaccaaactttagtaatttattcaagtatcattgttttaagtaaa |
38083238 |
T |
|
| Q |
101 |
agtaaacaaacatgtaaaaataaatacacacatagaatatctaggggttgatgaatgctgcatcagatactcatccaaaaaagatgtggaaatcttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38083237 |
agtaaacaaacatgtaaaaataaatacacacatagaatatctaggggttgatgaatgctgcatcagatactcatccaaaaaagatgtggaaatcttcttg |
38083138 |
T |
|
| Q |
201 |
ctcccgattgaagaagaccttgttggcatgtaatatgtaactatctctctaaaaatgctctttgagccttgaagcctttaccccttagctctagacccca |
300 |
Q |
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| T |
38083137 |
ctcccgattgaagaagaccttgttggcatgtaatatgtaattatctctctaaaaatgctctttgagccttgaagcctttaccccttagctctagacccca |
38083038 |
T |
|
| Q |
301 |
ctcccctaaacctttatttataaagaaaagatacacatataatagagaaataacaaaacagcttattttttattatcgtgacctttgctactcca |
395 |
Q |
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| T |
38083037 |
ctcccctaaacctttatttataaagaaaagatacacatataaaagagaaataacaaaacagcttattttttattatcgtgaccttagctactcca |
38082943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 38087445 - 38087404
Alignment:
| Q |
322 |
aaagaaaagatacacatataatagagaaataacaaaacagct |
363 |
Q |
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||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
38087445 |
aaagaaaagatacacatataaaagataaataacaaagcagct |
38087404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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