View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14156_low_5 (Length: 379)

Name: NF14156_low_5
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14156_low_5
NF14156_low_5
[»] chr3 (3 HSPs)
chr3 (92-379)||(39488556-39488836)
chr3 (20-61)||(36278125-36278166)
chr3 (22-62)||(42134944-42134984)
[»] chr2 (1 HSPs)
chr2 (12-78)||(29150445-29150511)
[»] chr7 (1 HSPs)
chr7 (10-78)||(42675302-42675370)
[»] chr4 (2 HSPs)
chr4 (14-74)||(31985045-31985105)
chr4 (194-235)||(20429912-20429953)
[»] chr8 (2 HSPs)
chr8 (11-74)||(2543089-2543152)
chr8 (10-61)||(14478122-14478173)
[»] chr5 (1 HSPs)
chr5 (29-78)||(38893819-38893868)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 92 - 379
Target Start/End: Complemental strand, 39488836 - 39488556
Alignment:
Q  92 gagtactgctatttagtaccacaaacggcatatacgaaacacaagaaatctcacacg--ttcagttttgtaaacaatatacacttctttatt-attannn 188  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| |||        
T  39488836 gagtactgctgtttagtacgacaaacggcatatacgaaacacaagaaatctcacgcgcattcagttttgtaaacaatatacacttctttatttatt---- 39488741  T
Q  189 nnnnnggcaaaaacagtaagcacttataaatttggtctttgatacctttgtaaactagcaataattaagcacataaggcactgtatttcaatcaagtttc 288  Q
         ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||    ||||||||||||||||||||||||||||||||    
T  39488740 tttttggcaaaaacagtaagcatttataaatttggtctttgatacctttgtaaaatagcagtaa----gcacataaggcactgtatttcaatcaagtttc 39488645  T
Q  289 gacacatgtcagtatatcaaacgagtatgtaaaaacttaaagggtgtccatccatttttcacaatgttttatgtctttatttctatctcta 379  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  39488644 gacacatgtca--atatcaaacgagtatgtaaaaacttaaagggcgtccatccatttttcacaatgttttgcgtctttatttctatctcta 39488556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 36278166 - 36278125
Alignment:
Q  20 aaataagatgaaatacatttatcaaataagtggatatctttt 61  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  36278166 aaataagatgaaatacatctatcaaataagtgaatatctttt 36278125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 42134944 - 42134984
Alignment:
Q  22 ataagatgaaatacatttatcaaataagtggatatcttttg 62  Q
    |||||||||| ||||| |||||||||| |||||||||||||    
T  42134944 ataagatgaagtacatctatcaaataaatggatatcttttg 42134984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 29150511 - 29150445
Alignment:
Q  12 aagtgtgaaaataagatgaaatacatttatcaaataagtggatatcttttggctttcttatttctac 78  Q
    |||||| ||||||||| ||||||||| ||||||| ||||||||||||||  |||||| |||||||||    
T  29150511 aagtgtcaaaataagacgaaatacatctatcaaacaagtggatatctttaagctttcctatttctac 29150445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 42675302 - 42675370
Alignment:
Q  10 ggaagtgtgaaaataagatgaaatacatttatcaaataagtggatatcttttggctttcttatttctac 78  Q
    |||||||| |||||||||| |||||| | ||||||| |||| ||||||||||| |||| | ||||||||    
T  42675302 ggaagtgtcaaaataagatcaaatacttctatcaaacaagtagatatcttttgactttttaatttctac 42675370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 31985105 - 31985045
Alignment:
Q  14 gtgtgaaaataagatgaaatacatttatcaaataagtggatatcttttggctttcttattt 74  Q
    ||||||||||||||  |||||||| |||||||||||| ||| ||||||  |||||||||||    
T  31985105 gtgtgaaaataagacaaaatacatctatcaaataagttgatttctttttactttcttattt 31985045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 20429912 - 20429953
Alignment:
Q  194 ggcaaaaacagtaagcacttataaatttggtctttgatacct 235  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||    
T  20429912 ggcaaaaacagcaagcacttataaatttggtatttgacacct 20429953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 2543089 - 2543152
Alignment:
Q  11 gaagtgtgaaaataagatgaaatacatttatcaaataagtggatatcttttggctttcttattt 74  Q
    ||||||| |||||||||  |||||||| ||||||| |||| ||| ||||||| |||||||||||    
T  2543089 gaagtgtcaaaataagacaaaatacatctatcaaacaagtagatgtcttttgactttcttattt 2543152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 14478173 - 14478122
Alignment:
Q  10 ggaagtgtgaaaataagatgaaatacatttatcaaataagtggatatctttt 61  Q
    |||||| | ||||||||| || ||||||||||||||||| ||||||||||||    
T  14478173 ggaagtatcaaaataagacgagatacatttatcaaataaatggatatctttt 14478122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 38893819 - 38893868
Alignment:
Q  29 gaaatacatttatcaaataagtggatatcttttggctttcttatttctac 78  Q
    ||||||||||||||||| |||||| ||| |||||||||||  ||||||||    
T  38893819 gaaatacatttatcaaacaagtgggtattttttggctttcccatttctac 38893868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University