View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14156_low_6 (Length: 375)
Name: NF14156_low_6
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14156_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 27 - 361
Target Start/End: Original strand, 43015921 - 43016257
Alignment:
| Q |
27 |
tacaactcaccaagatcaagggcataagagggtacattaaggcatttggtgattactaaatgattcatatggacataaaaattgaaaatgcacatggaat |
126 |
Q |
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| T |
43015921 |
tacaactcaccaagatcaagggcataagagggtacattaaggcatttggtgattactaaatgattcatatggacataaaaattgaaaatgcacacggaat |
43016020 |
T |
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| Q |
127 |
cgtttttatgcaaccaccatcatagcgctcaatgctc--ataccatagaacaatcaaagaaacaaatatatacaaaaacaaaggacggtggtgtttagtt |
224 |
Q |
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| T |
43016021 |
cgtttttatgcaaccaccatcatagcgctcaatgctctcataccatagaacaatcaaagaaacaaatatatacaaaaacaaaggacggtggtgtttagtt |
43016120 |
T |
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| Q |
225 |
agtcacatcacatgtatcttgcatcacagcaacatcacagattgaaaaatgaccagaagcattattttggctctatattgctatagaatgaaattaacaa |
324 |
Q |
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| T |
43016121 |
agtcacatcacatgtatcttgcatcacagcaacatcacagattgaaaaatgaccagaagcattattttggctctatattgctatagaatgaaattaacaa |
43016220 |
T |
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| Q |
325 |
atgagttttcgtgaaggcttttattgaattcctttgt |
361 |
Q |
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| T |
43016221 |
atgagttttcgtgaaggcttttattgaattcctttgt |
43016257 |
T |
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