View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14156_low_7 (Length: 371)
Name: NF14156_low_7
Description: NF14156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14156_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 32856041 - 32856328
Alignment:
| Q |
19 |
ttcaaagcactgtaactgttctgcactctgtggctactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaattt |
118 |
Q |
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| T |
32856041 |
ttcaaagcactgtaactgttctgcactctgtggctactaccgtcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaattt |
32856140 |
T |
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| Q |
119 |
atgtagaaacagatacactttttaatctatttctaatctaacattttccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagt |
218 |
Q |
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| T |
32856141 |
atgtagaaacagatacactttttaatctatttctaatctaacattttccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagt |
32856240 |
T |
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| Q |
219 |
taagagagaaagagttgggggttctgggttcgaacgtggacaaagaaatagatctaaatttaacaactaattactaacctttgtcatt |
306 |
Q |
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| T |
32856241 |
taagagagaaagagttgggggttctgggttcgaacgtggacagagaaatagatctaaatttaacaactaattactaacctttgtcatt |
32856328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 32850670 - 32850766
Alignment:
| Q |
53 |
tactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttct |
152 |
Q |
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| T |
32850670 |
tactaccgtcacctagtaaatcatctatctttgcaaggtaatcacacttc-----ctgcacaatttatgcagaaacagctacactttttcatctatttct |
32850764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 10223426 - 10223394
Alignment:
| Q |
275 |
aatttaacaactaattactaacctttgtcatta |
307 |
Q |
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| T |
10223426 |
aatttaacaactaattactaacatttgtcatta |
10223394 |
T |
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