View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14157_high_10 (Length: 314)
Name: NF14157_high_10
Description: NF14157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14157_high_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 14083726 - 14083423
Alignment:
| Q |
10 |
gcataggaatgaaagtatatgtaatgctagtgttagtgttctacgaggataaatgaaacaatcaacggactaaaagaatattgaaaaattgcattttact |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14083726 |
gcataggaatgaaagtatatgtaatgctagtgttagtgttctacgaggataaatgaaacaatcaacggactaaaagaatattgaaaa-ttgcattttact |
14083628 |
T |
|
| Q |
110 |
tctccaattttacttgaaaaatgcattttacaactctggaattgtcaatcagagctgtaaaaattttgtttcaagtttagtgtaagatgttaaacttctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14083627 |
tctccaattttacttgaaaaatgcattttacaactctggaattgtcaatcagagctgtaaaaattttgtttcaagtttagtataagatgttaaacttctt |
14083528 |
T |
|
| Q |
210 |
ataaatcaatcttgacaaatcccgtctcgattgtgcaagtggaaaccattttgagaacgaggggggaggaaattttttcaattacacgtagtattatgaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14083527 |
ataaatcaatcttgacaaatcccgtctggattgtgcaagtggaaaccattttgagaacgaggggggaggaaattttttcaattacacatagtattatgaa |
14083428 |
T |
|
| Q |
310 |
acaaa |
314 |
Q |
| |
|
||||| |
|
|
| T |
14083427 |
acaaa |
14083423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University