View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14157_high_1_N (Length: 983)

Name: NF14157_high_1_N
Description: NF14157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14157_high_1_N
NF14157_high_1_N
[»] chr5 (5 HSPs)
chr5 (343-982)||(14083423-14084065)
chr5 (124-350)||(14084573-14084797)
chr5 (1-72)||(14084849-14084919)
chr5 (298-401)||(39289023-39289126)
chr5 (298-401)||(39384210-39384313)
[»] chr6 (2 HSPs)
chr6 (236-413)||(12190730-12190907)
chr6 (379-413)||(1606279-1606313)
[»] chr3 (3 HSPs)
chr3 (379-413)||(29830022-29830056)
chr3 (379-413)||(44497618-44497652)
chr3 (496-541)||(53882446-53882491)


Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 343 - 982
Target Start/End: Complemental strand, 14084065 - 14083423
Alignment:
Q  343 tctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgcccgatgtccacccctaactaaatcattcaactcaaggaaatttaa 442  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14084065 tctgtactctacacccgcgggttcatctggatggggggtttgggcccgaacccgcccgatgtccacccctaactaaatcattcaactcatggaaatttaa 14083966  T
Q  443 gtcacgacctt---ataattgtgtttaatttagttgtttaaataatgtatgtctataatttaagctcacagccttgatatattttgattctttctcatca 539  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14083965 gtcacgaccttcagataattgtgtttaatttagttgtttaaataatgtatgtctataatttaagctcacagccttgatatattttgattctttctcatca 14083866  T
Q  540 taaattcataatgtgnnnnnnnnnnnnnnnnnnnn-gacaaaataaaactataaatttttatcatgcaacactcgatgaagttaaaaagaaacaattttt 638  Q
    |||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14083865 taaattcataatgtgtttttttttgatgatttttttgacaaaataaaactataaatttttatcatgcaacactcgatgaagttaaaaagaaacaattttt 14083766  T
Q  639 gtattttaagcattaatataaagaataaatcgtttcattgcataggaatgaaagtatatgtaatgctagtgttagtgttctacgaggataaatgaaacaa 738  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14083765 gtattttaagcattaatataaagaataaatcgtttcattgcataggaatgaaagtatatgtaatgctagtgttagtgttctacgaggataaatgaaacaa 14083666  T
Q  739 tcaacggactaaaagaatattgaaaaattgcattttacttctccaattttacttgaaaaatgcattttacaactctggaattgtcaatcagagctgtaaa 838  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14083665 tcaacggactaaaagaatattgaaaa-ttgcattttacttctccaattttacttgaaaaatgcattttacaactctggaattgtcaatcagagctgtaaa 14083567  T
Q  839 aattttgtttcaagtttagtataagatgttaaacttcttataaatcaatcttgacaaatcccgtctcgattgtgcaagtggaaaccattttgagaacgag 938  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14083566 aattttgtttcaagtttagtataagatgttaaacttcttataaatcaatcttgacaaatcccgtctggattgtgcaagtggaaaccattttgagaacgag 14083467  T
Q  939 gggggaggaaattttttcaattacacgtagtattatgaaacaaa 982  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  14083466 gggggaggaaattttttcaattacacatagtattatgaaacaaa 14083423  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 124 - 350
Target Start/End: Complemental strand, 14084797 - 14084573
Alignment:
Q  124 tgattgggccatatatttatttctaaatggctcagtataaagatgat-aaaaaatggcccattttgaagaaat-nnnnnnnnnttgcagcaaaatctgtt 221  Q
    ||||||||||||||    ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||          ||||||||||||| |||    
T  14084797 tgattgggccatat----atttctaaatggctcggtataaagatgataaaaaaatggtccattttgaagaaataaaaaaaaaattgcagcaaaatccgtt 14084702  T
Q  222 tgcccagaacattctgaatgacccattaatcgacccaacccgtatttacccaaccgtagaacccgcaacccgaatcacccgaacccgtccaatccgagtc 321  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  14084701 tgtccagaacattctgaatgacccattaatcgacccaacctgtatttacccaaccgtaggacccgcaacccgaatcacccgaacccgtctaatctgagtc 14084602  T
Q  322 caatttttgggcagaaaagagtctgtact 350  Q
    |||||||| |||||||||| |||||||||    
T  14084601 caatttttcggcagaaaagggtctgtact 14084573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14084919 - 14084849
Alignment:
Q  1 gcatttaacatccgcatttaacaatctttttaaaggaaaaactttaatatgtttatgacaacatgatccaag 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  14084919 gcatttaacatccgcatttaacaatctttttaaaggaaaaactttaata-atttacgacaacatgatccaag 14084849  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 39289126 - 39289023
Alignment:
Q  298 acccgaacccgtccaatccgagtccaatttttgggcagaaaagagtctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgc 397  Q
    |||||||||||| ||| |||| ||  || |||||||| ||  | |||||||||  ||||||||||||||  |||| ||| |||||||||| |||||||||    
T  39289126 acccgaacccgttcaaaccgaatctcatatttgggcaaaattgggtctgtactatacacccgcgggttcggctgggtggagggtttgggcccgaacccgc 39289027  T
Q  398 ccga 401  Q
    ||||    
T  39289026 ccga 39289023  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 298 - 401
Target Start/End: Original strand, 39384210 - 39384313
Alignment:
Q  298 acccgaacccgtccaatccgagtccaatttttgggcagaaaagagtctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgc 397  Q
    |||||||||||| ||| |||| ||  || |||||||| ||  | |||||||||  ||||||||||||||  |||| ||| |||||||||| |||||||||    
T  39384210 acccgaacccgttcaaaccgaatctcatatttgggcaaaattgggtctgtactatacacccgcgggttcggctgggtggagggtttgggcccgaacccgc 39384309  T
Q  398 ccga 401  Q
    ||||    
T  39384310 ccga 39384313  T

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Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 236 - 413
Target Start/End: Original strand, 12190730 - 12190907
Alignment:
Q  236 tgaatgacccattaatcgacccaacccgtatttacccaaccgtagaacccgcaacccgaatcacccgaacccgtccaatccgagtccaatttttgggcag 335  Q
    |||||||||||||||| |  ||||||||| |  ||||||||||  |||||| ||||||| ||||||||||||  ||||||||| |||| | |||||| ||    
T  12190730 tgaatgacccattaattggtccaacccgtttgaacccaaccgtttaacccgtaacccgattcacccgaacccaaccaatccgactccattatttgggtag 12190829  T
Q  336 aaaagagtctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgcccgatgtccaccccta 413  Q
    ||| | || |||| || |||||||| ||||   |||||   | ||||||| | |||||||||||||||||||||||||    
T  12190830 aaatgggtgtgtattctacacccgcaggttgggctggagtagaggtttggacccgaacccgcccgatgtccaccccta 12190907  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 1606279 - 1606313
Alignment:
Q  379 ggtttgggctcgaacccgcccgatgtccaccccta 413  Q
    ||||||||| |||||||||||||||||||||||||    
T  1606279 ggtttgggcccgaacccgcccgatgtccaccccta 1606313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 29830022 - 29830056
Alignment:
Q  379 ggtttgggctcgaacccgcccgatgtccaccccta 413  Q
    ||||||||| |||||||||||||||||||||||||    
T  29830022 ggtttgggcccgaacccgcccgatgtccaccccta 29830056  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 44497618 - 44497652
Alignment:
Q  379 ggtttgggctcgaacccgcccgatgtccaccccta 413  Q
    ||||||||| |||||||||||||||||||||||||    
T  44497618 ggtttgggcccgaacccgcccgatgtccaccccta 44497652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 53882446 - 53882491
Alignment:
Q  496 aatttaagctcacagccttgatatattttgattctttctcatcata 541  Q
    ||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  53882446 aatttaagctcacggccttgacatagtttgattctttttcatcata 53882491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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