View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14157_high_2 (Length: 960)
Name: NF14157_high_2
Description: NF14157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14157_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 288 - 938
Target Start/End: Complemental strand, 22303489 - 22302816
Alignment:
| Q |
288 |
tcgaataatatcaatattattagttgaggtatatattttaggatataaatatcacattgctactattaggcaccaactcaccatttatttgaacattttc |
387 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
22303489 |
tcgaataatatcaatattattagttgagttatgtattttaggatataaatatcacattgctactgtcaggcaccaactcaccatttatttgaatattttc |
22303390 |
T |
|
| Q |
388 |
ctccttgcattgaagattttatttataataaatgcaaacagtacatttctgtaaaaataaaataaaatagagtttcaaaattctagatatac-ttgtacg |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22303389 |
ctccttgcattgaagattttatttataataaatgcaaacagtacatttctgtaaaaattaaataaaatagagtttcaaaattctagatatactttgtacg |
22303290 |
T |
|
| Q |
487 |
aaccgtacatatattttctcta----gtcttaaaatattgggttggttaataataatatatttttagaaat---------taggagactttctttgttgg |
573 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
22303289 |
aaccgtacatatattttctctagtctgtcttaaaatatagggttggt---taataatatatttttagaaatttcacagaataggagactttccttgttgg |
22303193 |
T |
|
| Q |
574 |
cgtccgtagctatatacaaataccacaaacgcacttgagagacacttcaaagtggaccaaaccaaaacactt---caacaacaacctttgtccc-ttaca |
669 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
22303192 |
cgtccgtagctatatacaaataccacaaacgcacttgagagacacttcaaagtggaccaaaccaaaacacttcaacaacaacaacctttgtccctttaca |
22303093 |
T |
|
| Q |
670 |
aatctcttcctcctaagcttttaacaaacaacctcaaacaaaacaaccataaccttcttatcttaaactccttcagttc---------aagttcttttaa |
760 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | | |
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| T |
22303092 |
aatctcttcctcctaagcttttaacaaacaacctcaaacaaaacaaccataaccttcttatcttaaactccttcagttcaactttgttaagttttgtata |
22302993 |
T |
|
| Q |
761 |
acctggtttcagatcagattttcnnnnnnngttggtaatctttttaaggtgagagactcatatgtttttgaactgttttcactttccttatttatattat |
860 |
Q |
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| T |
22302992 |
agct-gtttcagatcagattttctttttttgttggtaatctttttaaggtgagagactcatatgtttttcaactgttttcactttccttatttatattat |
22302894 |
T |
|
| Q |
861 |
gttgttaaagcaaagttgtttttattatgagtgttttatttttctggtcatgtggtgatggttatgatgatgatgatg |
938 |
Q |
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| T |
22302893 |
gttgttaaagcaaagttgtttttcttatgagtgttttatttttctggtcatgtggtgatggttatgatgatgatgatg |
22302816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 22303632 - 22303472
Alignment:
| Q |
118 |
aaaaccactttaagatagatcaattatatctggtagaattaattttagaccatttgttatagtttttgcgacaaatttattaataacattacataaagaa |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22303632 |
aaaagcactttaagatagatcaattatatctggtagaattaattttagaccattcgttatagtttttgcgacaattttattaataacattacataaagaa |
22303533 |
T |
|
| Q |
218 |
attggtctaaaatcaccttaaaaaacagagcgaaaatggttactcgaataatattaatatt |
278 |
Q |
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| T |
22303532 |
attggtctaaaatcaccttaaaaaacagagcgaaaatggttactcgaataatatcaatatt |
22303472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 22304804 - 22304759
Alignment:
| Q |
23 |
atcatcagtttggacataaagcttcaaccctacaaggttacaaaac |
68 |
Q |
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||||| ||||||||||||||||||||||| ||||||| |||||||| |
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| T |
22304804 |
atcataagtttggacataaagcttcaaccttacaaggctacaaaac |
22304759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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