View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14157_high_9 (Length: 319)
Name: NF14157_high_9
Description: NF14157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14157_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 6494348 - 6494656
Alignment:
| Q |
11 |
caaagggaattcctttggggtggtgtttcggggggccgaaagatttcttgggtgaagtggaggtcggtgtgccaaccaaaggataggggtggtctagggg |
110 |
Q |
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| T |
6494348 |
caaagggaattcctttggggtggtgtttcggggggccaaaagatttcttgggtgaagtggagatcggtgtgccaaccaaaggataggggtggtcttgggg |
6494447 |
T |
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| Q |
111 |
tgagggatataagggttgttaatgttagtttgttggctaaatggaggtggaggttattgattggagaagatacactttggaatgaggttctcatggagaa |
210 |
Q |
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| T |
6494448 |
tgagagatataagggttgttaatgttagtttgttggctaaatggaggtggaggttattgattggagaagatacactttggaatgaggttctcatggagaa |
6494547 |
T |
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| Q |
211 |
atatggtaataacatcgctgacttggttgagggaggtggtgatgttagggcggctatctcctctaggtggtggaaggacatctccaatcttgaaggtggt |
310 |
Q |
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| T |
6494548 |
atatggtaataacatcggtgacttggttgagggaggtggtgatgttagggtggctatctcctctaggtggtggaaggacatctccaatcttgaaggtggt |
6494647 |
T |
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| Q |
311 |
gggaagggg |
319 |
Q |
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| T |
6494648 |
gggaagggg |
6494656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 44514589 - 44514374
Alignment:
| Q |
11 |
caaagggaattcctttggggtggtgtttcggggggc-cgaaagatttcttgggtgaagtggaggtcggtgtgccaaccaaaggataggggtggtctaggg |
109 |
Q |
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| T |
44514589 |
caaagggagctcctttgggggggtgtcacggggggggcgtaagattagttaggttaagtggagaacggtgtgccaaccgaaggagaaaggtgggcttgat |
44514490 |
T |
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| Q |
110 |
gtgagggatataagggttgttaatgttagtttgttggctaaatggaggtggaggttattgattggagaagatacactttggaatgaggttctcatggaga |
209 |
Q |
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| T |
44514489 |
gtgggggatattagggtggtgaatgttagtttgttggccaaatggagatggaggttgttgaacgaagatcatgccctttggaaagaggttcttgtagaga |
44514390 |
T |
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| Q |
210 |
aatatggtaataacat |
225 |
Q |
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| T |
44514389 |
aatatggtaatcacat |
44514374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 44692075 - 44692187
Alignment:
| Q |
58 |
ttgggtgaagtggaggtcggtgtgccaaccaaaggataggggtggtctaggggtgagggatataagggttgttaatgttagtttgttggctaaatggagg |
157 |
Q |
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| T |
44692075 |
ttgggtgaagtggagatcagtttgtcaaccaaaggggaacggtggtcttggggtgagggacgttagggtggtgaatcttagtcttttggctaagtggagg |
44692174 |
T |
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| Q |
158 |
tggaggttattga |
170 |
Q |
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| T |
44692175 |
tggaggttattga |
44692187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 40920160 - 40920263
Alignment:
| Q |
58 |
ttgggtgaagtggaggtcggtgtgccaaccaaaggataggggtggtctaggggtgagggatataagggttgttaatgttagtttgttggctaaatggagg |
157 |
Q |
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| T |
40920160 |
ttgggtgaaatggagtacggtgtgtcaaccgaaggaggaggggggtctaggtgtgagggatataagggtggtgaatattagccttttggctaaatggaga |
40920259 |
T |
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| Q |
158 |
tgga |
161 |
Q |
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|||| |
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| T |
40920260 |
tgga |
40920263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 43074851 - 43074691
Alignment:
| Q |
58 |
ttgggtgaagtggaggtcggtgtgccaaccaaaggataggggtggtctaggggtgagggatataagggttgttaatgttagtttgttggctaaatggagg |
157 |
Q |
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| T |
43074851 |
ttgggttaagtggagattggtgtgccaaccaaaggagaaggggggcctcggggtcaaggatgtgaggttgatgaacttgagtttgttagctaagtggagg |
43074752 |
T |
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| Q |
158 |
tggaggttattgattggagaagatacactttggaatgaggttctcatggagaaatatggta |
218 |
Q |
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| T |
43074751 |
tggaggttgttgaatggtgaggaggctctttggaaggaggtgctagtggagaaatatggta |
43074691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 40754702 - 40754641
Alignment:
| Q |
101 |
ggtctaggggtgagggatataagggttgttaatgttagtttgttggctaaatggaggtggag |
162 |
Q |
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| T |
40754702 |
ggtcttggggttagggatgttagggtggttaatgtgagtttgttggcgaaatggagatggag |
40754641 |
T |
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