View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14157_low_1 (Length: 650)

Name: NF14157_low_1
Description: NF14157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14157_low_1
NF14157_low_1
[»] chr5 (5 HSPs)
chr5 (141-367)||(14084573-14084797)
chr5 (7-89)||(14084849-14084930)
chr5 (360-431)||(14083994-14084065)
chr5 (315-418)||(39289023-39289126)
chr5 (315-418)||(39384210-39384313)
[»] chr7 (2 HSPs)
chr7 (545-635)||(7144068-7144158)
chr7 (431-505)||(7144198-7144272)
[»] chr6 (2 HSPs)
chr6 (253-430)||(12190730-12190907)
chr6 (396-430)||(1606279-1606313)
[»] chr3 (2 HSPs)
chr3 (396-437)||(29830022-29830063)
chr3 (396-430)||(44497618-44497652)
[»] chr8 (2 HSPs)
chr8 (398-430)||(16296575-16296607)
chr8 (398-430)||(16304277-16304309)
[»] chr1 (1 HSPs)
chr1 (398-430)||(22894339-22894371)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 141 - 367
Target Start/End: Complemental strand, 14084797 - 14084573
Alignment:
Q  141 tgattgggccatatatttatttctaaatggctcagtataaagatgat-aaaaaatggcccattttgaagaaat-nnnnnnnnnttgcagcaaaatctgtt 238  Q
    ||||||||||||||    ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||          ||||||||||||| |||    
T  14084797 tgattgggccatat----atttctaaatggctcggtataaagatgataaaaaaatggtccattttgaagaaataaaaaaaaaattgcagcaaaatccgtt 14084702  T
Q  239 tgcccagaacattctgaatgacccattaatcgacccaacccgtatttacccaaccgtagaacccgcaacccgaatcacccgaacccgtccaatccgagtc 338  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  14084701 tgtccagaacattctgaatgacccattaatcgacccaacctgtatttacccaaccgtaggacccgcaacccgaatcacccgaacccgtctaatctgagtc 14084602  T
Q  339 caatttttgggcagaaaagagtctgtact 367  Q
    |||||||| |||||||||| |||||||||    
T  14084601 caatttttcggcagaaaagggtctgtact 14084573  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 14084930 - 14084849
Alignment:
Q  7 ggacatcatcagcatttaacatccgcatttaacaatctttttaaaggaaaaactttaatatgtttatgacaacatgatccaag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  14084930 ggacatcatcagcatttaacatccgcatttaacaatctttttaaaggaaaaactttaata-atttacgacaacatgatccaag 14084849  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 14084065 - 14083994
Alignment:
Q  360 tctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgcccgatgtccacccctaa 431  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14084065 tctgtactctacacccgcgggttcatctggatggggggtttgggcccgaacccgcccgatgtccacccctaa 14083994  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 418
Target Start/End: Complemental strand, 39289126 - 39289023
Alignment:
Q  315 acccgaacccgtccaatccgagtccaatttttgggcagaaaagagtctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgc 414  Q
    |||||||||||| ||| |||| ||  || |||||||| ||  | |||||||||  ||||||||||||||  |||| ||| |||||||||| |||||||||    
T  39289126 acccgaacccgttcaaaccgaatctcatatttgggcaaaattgggtctgtactatacacccgcgggttcggctgggtggagggtttgggcccgaacccgc 39289027  T
Q  415 ccga 418  Q
    ||||    
T  39289026 ccga 39289023  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 418
Target Start/End: Original strand, 39384210 - 39384313
Alignment:
Q  315 acccgaacccgtccaatccgagtccaatttttgggcagaaaagagtctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgc 414  Q
    |||||||||||| ||| |||| ||  || |||||||| ||  | |||||||||  ||||||||||||||  |||| ||| |||||||||| |||||||||    
T  39384210 acccgaacccgttcaaaccgaatctcatatttgggcaaaattgggtctgtactatacacccgcgggttcggctgggtggagggtttgggcccgaacccgc 39384309  T
Q  415 ccga 418  Q
    ||||    
T  39384310 ccga 39384313  T

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Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 545 - 635
Target Start/End: Complemental strand, 7144158 - 7144068
Alignment:
Q  545 cccaagtgtttctactactcattagattgagtatcaaattaagcttttcatccatcgcttcttgcttggttgtctgagcatccaacttcat 635  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7144158 cccaagtgtttctactactcatcagattgattatcaaattaagcttttcatccatcgcttcttgcttggttgtctgagcatccaccttcat 7144068  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 431 - 505
Target Start/End: Complemental strand, 7144272 - 7144198
Alignment:
Q  431 aatatatacatagcttgcataaaagataatgagaataagcattgaatacacgttaatattgttgattaaagttac 505  Q
    |||||||||||||||||||||||||||  ||||||||| |||| |||||| ||||||||||||||||||||||||    
T  7144272 aatatatacatagcttgcataaaagattttgagaataaacattaaatacaagttaatattgttgattaaagttac 7144198  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 253 - 430
Target Start/End: Original strand, 12190730 - 12190907
Alignment:
Q  253 tgaatgacccattaatcgacccaacccgtatttacccaaccgtagaacccgcaacccgaatcacccgaacccgtccaatccgagtccaatttttgggcag 352  Q
    |||||||||||||||| |  ||||||||| |  ||||||||||  |||||| ||||||| ||||||||||||  ||||||||| |||| | |||||| ||    
T  12190730 tgaatgacccattaattggtccaacccgtttgaacccaaccgtttaacccgtaacccgattcacccgaacccaaccaatccgactccattatttgggtag 12190829  T
Q  353 aaaagagtctgtactcaacacccgcgggttcatctggatggggggtttgggctcgaacccgcccgatgtccaccccta 430  Q
    ||| | || |||| || |||||||| ||||   |||||   | ||||||| | |||||||||||||||||||||||||    
T  12190830 aaatgggtgtgtattctacacccgcaggttgggctggagtagaggtttggacccgaacccgcccgatgtccaccccta 12190907  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 1606279 - 1606313
Alignment:
Q  396 ggtttgggctcgaacccgcccgatgtccaccccta 430  Q
    ||||||||| |||||||||||||||||||||||||    
T  1606279 ggtttgggcccgaacccgcccgatgtccaccccta 1606313  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 29830022 - 29830063
Alignment:
Q  396 ggtttgggctcgaacccgcccgatgtccacccctaaatatat 437  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  29830022 ggtttgggcccgaacccgcccgatgtccacccctatatatat 29830063  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 44497618 - 44497652
Alignment:
Q  396 ggtttgggctcgaacccgcccgatgtccaccccta 430  Q
    ||||||||| |||||||||||||||||||||||||    
T  44497618 ggtttgggcccgaacccgcccgatgtccaccccta 44497652  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Complemental strand, 16296607 - 16296575
Alignment:
Q  398 tttgggctcgaacccgcccgatgtccaccccta 430  Q
    ||||||| |||||||||||||||||||||||||    
T  16296607 tttgggcccgaacccgcccgatgtccaccccta 16296575  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Complemental strand, 16304309 - 16304277
Alignment:
Q  398 tttgggctcgaacccgcccgatgtccaccccta 430  Q
    ||||||| |||||||||||||||||||||||||    
T  16304309 tttgggcccgaacccgcccgatgtccaccccta 16304277  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 430
Target Start/End: Complemental strand, 22894371 - 22894339
Alignment:
Q  398 tttgggctcgaacccgcccgatgtccaccccta 430  Q
    ||||||| |||||||||||||||||||||||||    
T  22894371 tttgggcccgaacccgcccgatgtccaccccta 22894339  T

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