View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14157_low_2 (Length: 366)

Name: NF14157_low_2
Description: NF14157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14157_low_2
NF14157_low_2
[»] chr5 (17 HSPs)
chr5 (1-354)||(7835867-7836212)
chr5 (9-148)||(18695169-18695308)
chr5 (9-147)||(16900996-16901135)
chr5 (10-147)||(25556876-25557012)
chr5 (9-149)||(31055312-31055452)
chr5 (10-147)||(26639036-26639174)
chr5 (9-80)||(245760-245831)
chr5 (96-150)||(31648238-31648292)
chr5 (9-143)||(40428642-40428777)
chr5 (10-148)||(16307475-16307613)
chr5 (98-155)||(37961239-37961296)
chr5 (96-148)||(23765418-23765470)
chr5 (96-148)||(23815266-23815318)
chr5 (98-146)||(35302169-35302217)
chr5 (88-150)||(20654040-20654102)
chr5 (88-152)||(2373391-2373455)
chr5 (96-148)||(38408627-38408679)
[»] chr2 (17 HSPs)
chr2 (9-150)||(30714271-30714412)
chr2 (9-146)||(9787725-9787861)
chr2 (9-152)||(11176073-11176217)
chr2 (10-151)||(18537824-18537965)
chr2 (9-146)||(38716359-38716496)
chr2 (9-146)||(15735230-15735367)
chr2 (96-147)||(43301656-43301707)
chr2 (9-161)||(6763702-6763855)
chr2 (9-143)||(25298804-25298939)
chr2 (9-122)||(2986852-2986966)
chr2 (9-146)||(9051028-9051165)
chr2 (95-148)||(32677814-32677867)
chr2 (10-151)||(17368383-17368523)
chr2 (18-144)||(22191220-22191347)
chr2 (98-148)||(36464527-36464577)
chr2 (96-152)||(25884172-25884228)
chr2 (12-64)||(36464441-36464493)
[»] chr7 (23 HSPs)
chr7 (9-150)||(24597513-24597653)
chr7 (9-148)||(21224352-21224490)
chr7 (9-147)||(19195213-19195351)
chr7 (9-152)||(27869190-27869333)
chr7 (10-147)||(8526962-8527099)
chr7 (10-122)||(13577811-13577923)
chr7 (9-146)||(31494076-31494214)
chr7 (10-147)||(11843177-11843315)
chr7 (9-77)||(6650676-6650744)
chr7 (9-147)||(20636785-20636923)
chr7 (9-150)||(48175958-48176101)
chr7 (9-148)||(19493484-19493622)
chr7 (17-65)||(17305939-17305987)
chr7 (9-65)||(36746585-36746641)
chr7 (99-146)||(23080818-23080865)
chr7 (97-151)||(21225573-21225627)
chr7 (9-78)||(41452318-41452387)
chr7 (9-65)||(2331179-2331235)
chr7 (10-54)||(4193717-4193761)
chr7 (98-151)||(19493320-19493369)
chr7 (99-147)||(21225803-21225850)
chr7 (9-69)||(21264134-21264194)
chr7 (9-65)||(33237495-33237551)
[»] chr6 (17 HSPs)
chr6 (10-147)||(34834092-34834229)
chr6 (10-148)||(35102489-35102628)
chr6 (9-148)||(18749095-18749234)
chr6 (9-65)||(32451892-32451948)
chr6 (9-146)||(31210960-31211095)
chr6 (9-78)||(14572247-14572316)
chr6 (9-80)||(18791523-18791594)
chr6 (10-148)||(4597403-4597542)
chr6 (88-150)||(8412754-8412816)
chr6 (96-150)||(15298738-15298792)
chr6 (9-63)||(24603527-24603581)
chr6 (9-63)||(26710391-26710445)
chr6 (9-54)||(20863821-20863866)
chr6 (96-149)||(22968407-22968460)
chr6 (96-149)||(23819933-23819986)
chr6 (9-54)||(25819850-25819895)
chr6 (9-150)||(34528314-34528454)
[»] chr4 (20 HSPs)
chr4 (6-150)||(15795480-15795624)
chr4 (9-148)||(13826418-13826557)
chr4 (9-147)||(15058819-15058956)
chr4 (12-148)||(43793629-43793766)
chr4 (18-147)||(47869829-47869958)
chr4 (10-64)||(27018381-27018435)
chr4 (9-63)||(13397759-13397813)
chr4 (9-54)||(51291262-51291307)
chr4 (96-148)||(4433181-4433233)
chr4 (9-80)||(5304414-5304485)
chr4 (9-64)||(35475455-35475510)
chr4 (98-149)||(45633435-45633486)
chr4 (88-150)||(35475287-35475349)
chr4 (88-150)||(41877270-41877332)
chr4 (96-150)||(55780383-55780437)
chr4 (96-150)||(55844563-55844617)
chr4 (98-147)||(1588414-1588463)
chr4 (15-63)||(13394620-13394668)
chr4 (9-65)||(25618710-25618765)
chr4 (21-65)||(36729170-36729214)
[»] scaffold0025 (2 HSPs)
scaffold0025 (9-146)||(19448-19585)
scaffold0025 (96-147)||(62072-62123)
[»] chr3 (27 HSPs)
chr3 (9-149)||(13081060-13081201)
chr3 (9-148)||(26628023-26628163)
chr3 (21-150)||(32960641-32960769)
chr3 (9-148)||(25179744-25179881)
chr3 (9-80)||(48907359-48907430)
chr3 (9-147)||(3328812-3328951)
chr3 (9-148)||(22500594-22500733)
chr3 (9-146)||(8338940-8339078)
chr3 (9-146)||(28154882-28155020)
chr3 (10-150)||(34878525-34878666)
chr3 (9-143)||(6927636-6927770)
chr3 (10-63)||(8542777-8542830)
chr3 (9-80)||(4522120-4522191)
chr3 (9-148)||(25022662-25022801)
chr3 (9-146)||(3821048-3821186)
chr3 (96-148)||(22447738-22447790)
chr3 (9-146)||(27852753-27852889)
chr3 (98-150)||(40836434-40836486)
chr3 (10-150)||(46387579-46387718)
chr3 (88-146)||(3781124-3781182)
chr3 (9-78)||(26177025-26177094)
chr3 (96-149)||(26628279-26628332)
chr3 (96-149)||(28173726-28173779)
chr3 (9-54)||(33279678-33279723)
chr3 (9-54)||(40836271-40836316)
chr3 (9-54)||(43668594-43668639)
chr3 (9-69)||(31039055-31039115)
[»] scaffold0419 (1 HSPs)
scaffold0419 (10-146)||(2961-3097)
[»] chr8 (16 HSPs)
chr8 (9-152)||(8802394-8802538)
chr8 (9-147)||(5192271-5192409)
chr8 (9-149)||(4518866-4519005)
chr8 (22-151)||(21929842-21929972)
chr8 (9-150)||(44147136-44147278)
chr8 (9-148)||(19391386-19391525)
chr8 (96-148)||(4807598-4807650)
chr8 (88-146)||(3380199-3380257)
chr8 (9-146)||(38630221-38630359)
chr8 (9-65)||(23565255-23565311)
chr8 (100-149)||(4807859-4807908)
chr8 (9-54)||(19924431-19924476)
chr8 (10-147)||(21666273-21666411)
chr8 (17-54)||(31268453-31268490)
chr8 (10-50)||(7117211-7117251)
chr8 (9-65)||(18252968-18253024)
[»] chr1 (20 HSPs)
chr1 (12-147)||(24196430-24196566)
chr1 (9-147)||(4059521-4059660)
chr1 (9-146)||(3616965-3617102)
chr1 (10-150)||(27092849-27092989)
chr1 (9-145)||(48471864-48472001)
chr1 (9-80)||(19077992-19078063)
chr1 (9-80)||(19125882-19125953)
chr1 (97-147)||(31084615-31084665)
chr1 (9-54)||(24962119-24962164)
chr1 (9-65)||(28920738-28920795)
chr1 (9-150)||(2425390-2425531)
chr1 (9-69)||(29182078-29182138)
chr1 (98-149)||(2657767-2657818)
chr1 (98-143)||(26605528-26605573)
chr1 (96-149)||(28920905-28920958)
chr1 (96-145)||(43706655-43706704)
chr1 (96-144)||(10685015-10685063)
chr1 (9-65)||(16551725-16551781)
chr1 (96-148)||(24196259-24196311)
chr1 (96-148)||(46432214-46432266)
[»] scaffold0087 (1 HSPs)
scaffold0087 (9-138)||(24972-25102)
[»] scaffold0406 (1 HSPs)
scaffold0406 (9-148)||(2157-2296)
[»] scaffold0607 (1 HSPs)
scaffold0607 (9-147)||(2047-2187)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-65)||(455193-455249)
[»] scaffold0179 (1 HSPs)
scaffold0179 (9-148)||(5648-5787)
[»] scaffold0683 (1 HSPs)
scaffold0683 (9-149)||(5117-5259)
[»] scaffold0267 (1 HSPs)
scaffold0267 (9-66)||(3649-3706)
[»] scaffold0150 (1 HSPs)
scaffold0150 (21-150)||(6009-6138)
[»] scaffold1875 (1 HSPs)
scaffold1875 (10-148)||(754-893)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-54)||(250611-250656)
[»] scaffold0291 (1 HSPs)
scaffold0291 (17-65)||(10095-10143)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 7835867 - 7836212
Alignment:
Q  1 agaggtgggattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaa 100  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||| ||| || |||||||||||||||||||||||||       |||||||||||||    
T  7835867 agaggtgggattatggcccttttttttagacatgtggcgtcttctcaacaactttgggatgaaagaggctagaattgccatttttttaataggaagccaa 7835966  T
Q  101 aatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaattcaaataaactaatttaataaacctcaatggatttcatgaggtattgta 200  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7835967 aatcgcaatattttaaaacataagaggcgaaaagtgcagtttagcctaaattcaaataaactaatttaataaacctcaatggatttcatgaggtattgta 7836066  T
Q  201 gacatagattgtgaaggacaataataatttaaacctggaccagggtgctgcagaagaggaccaacaagaccttgtcggttgttctgcaagacaaattcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7836067 gacatagattgtgaaggacaataataatttaaacctggaccagggtgctgcagaagaggaccaacaagaccttgtcggttgttctgcaagacaaattcac 7836166  T
Q  301 cactcattcagtcattctcattctcagtgcaaatacaaccatcatccctatgct 354  Q
            ||||||||||||||||||||||||||||||||||||||||||||||    
T  7836167 --------cagtcattctcattctcagtgcaaatacaaccatcatccctatgct 7836212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 18695169 - 18695308
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||| | |||||||| ||| | ||||||||       ||||||  |||||||||||||    
T  18695169 gattatggccccttttttgggacacgtggcgtcttctcagcaattttgagatgaaaggggccaaaattgccatttttttaatagggggccaaaatcgcaa 18695268  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||||||||| | |||||||| |||| |||||||||    
T  18695269 tattttgaaacatagggggcgaaaagtgcactttagccta 18695308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 16901135 - 16900996
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||  ||| | ||||||||        ||||||  | ||||||||||    
T  16901135 gattatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaatgggccaaaattgccattttttttaatagggggtcaaaatcgca 16901036  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    | ||||||||||||| |||||||||| |||||||||||||    
T  16901035 acattttgaaacataggaggcgaaaagtgcagtttagcct 16900996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 25557012 - 25556876
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    |||||||||||||||||| |||| | ||||||||||||||||||| |||||||||| ||| | ||||||||       ||||||  |||||||| ||||     
T  25557012 attatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccaattttttaatagggggccaaaattgcaac 25556913  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    |||||||||||| || ||||| || |||||||||||||    
T  25556912 attttgaaacat-aggggcgataagtgcagtttagcct 25556876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 31055452 - 31055312
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||| |||||||| || |||| | ||| |||||| |||||||| |||||||||| ||| | |||||| |       ||||||  |||||||| ||||    
T  31055452 gattatgaccccttttctgggacacgtggcatcttctgagcaattttgggatgaaaggggccaaaattgctatttttttaatagggggccaaaattgcaa 31055353  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
     ||| ||||||||| | |||||||| |||||||||||||||    
T  31055352 cattatgaaacatagggggcgaaaagtgcagtttagcctaa 31055312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 26639174 - 26639036
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||| |||||||| |||| | |||||||||||| |||||| |||||||| | ||| | ||||||||        |||||| || ||||||| |||    
T  26639174 attatggcctcttttttgggacacgtggcgtcttctcaacaattttgggatgaagggggccaaaattgccattttttttaatagggagtcaaaatcacaa 26639075  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
     ||||||||||||| | |||||||| |||| ||||||||    
T  26639074 cattttgaaacatagggggcgaaaagtgcactttagcct 26639036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 245760 - 245831
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca 80  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  ||||||| | ||| | ||||||||    
T  245760 gattatggccccttttttgggacacgtggcgtcttctcagcaattttcggatgaagggggccaaaattgcca 245831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 31648238 - 31648292
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    ||||||||||||| ||||||||||||| | | |||||| ||||||||||||||||    
T  31648238 gccaaaatcgcaacattttgaaacataggggacgaaaagtgcagtttagcctaaa 31648292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 40428777 - 40428642
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||| ||||||||||| |||| | ||||||||||||||||||| |||| ||| | ||| | ||||||||        ||||||   |||||||||||    
T  40428777 gattatgaccccttttttgggacacgtggcgtcttctcagcaattttgggacgaagggggccaaaattgccattttttttaataggggaccaaaatcgca 40428678  T
Q  108 atattttgaaacataagaggcgaaaaatgcagttta 143  Q
    | ||||||||||||| | |||||||| |||| ||||    
T  40428677 acattttgaaacatagggggcgaaaagtgcacttta 40428642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 16307613 - 16307475
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    |||||| ||||||||||  |||||| |||||||||||||||||||   |||||||| ||| | ||||||||       ||||||   |||||||| |||     
T  16307613 attatgacccctttttttggacatgtggcgtcttctcagcaattttaagatgaaaggggccaaaattgccatttttttaataggggaccaaaatcacaac 16307514  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    ||||| ||||||| | || ||||| ||||||||| ||||    
T  16307513 attttaaaacatagggggtgaaaagtgcagtttaaccta 16307475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 37961296 - 37961239
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaattcaa 155  Q
    |||||||||||||||||||||| || |||| ||||| ||| |||||||||||| ||||    
T  37961296 caaaatcgcaatattttgaaacttaggaggtgaaaagtgcggtttagcctaaaatcaa 37961239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 23765470 - 23765418
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||| |||| ||||||||||||| | |||||||| ||||||||||||||    
T  23765470 gccaaaattgcaacattttgaaacatagggggcgaaaagtgcagtttagccta 23765418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 23815318 - 23815266
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||| |||| ||||||||||||| | |||||||| ||||||||||||||    
T  23815318 gccaaaattgcaacattttgaaacatagggggcgaaaagtgcagtttagccta 23815266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 35302169 - 35302217
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    ||||||||||| |||||||||| |||| || ||||||||||||||||||    
T  35302169 caaaatcgcaacattttgaaacttaaggggagaaaaatgcagtttagcc 35302217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 20654040 - 20654102
Alignment:
Q  88 aataggaagccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    ||||||| ||||||||| ||| |||||||||| || | | |||||| ||||||||||||||||    
T  20654040 aataggaggccaaaatcacaacattttgaaacttaggggtcgaaaagtgcagtttagcctaaa 20654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 2373391 - 2373455
Alignment:
Q  88 aataggaagccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaatt 152  Q
    ||||||| |||||||||||||  ||||||||| || | |  ||||| ||||||||||||||||||    
T  2373391 aataggaggccaaaatcgcaactttttgaaacttaggggttgaaaagtgcagtttagcctaaatt 2373455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 38408679 - 38408627
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||||||||||||||||||| || | | |||||| || |||||||||||    
T  38408679 gccaaaatcgcaatattttgaaacttaggggacgaaaagtggagtttagccta 38408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 30714412 - 30714271
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||| | ||||||||       ||||||  |||||||||||||    
T  30714412 gattatggccccttttttgggacatgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccatttttttaatagggggccaaaatcgcaa 30714313  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
     ||||| ||||||| | |||||||| |||| |||||||||||    
T  30714312 cattttaaaacatagggggcgaaaagtgcactttagcctaaa 30714271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 9787725 - 9787861
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | ||||| ||       ||||||  |||||||| ||||    
T  9787725 gattatggccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgtca-ttttttaatagggggccaaaattgcaa 9787823  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    |||||||||||||| | |||||||| || |||||||||    
T  9787824 tattttgaaacatagggggcgaaaagtgtagtttagcc 9787861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 11176073 - 11176217
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||| |   | ||||||||        ||||||  | ||||||||||    
T  11176073 gattatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaagggatcaaaattgccattttttttaatagggggtcaaaatcgca 11176172  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcctaaatt 152  Q
    | ||||||||||||| ||||| |||| |||| |||||||||||||    
T  11176173 acattttgaaacataggaggccaaaagtgcactttagcctaaatt 11176217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 18537965 - 18537824
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    |||||||||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | |||||| |       ||||||   ||||||| ||||     
T  18537965 attatggccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctatttttttaataggggaccaaaattgcaac 18537866  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagcctaaat 151  Q
    ||||| ||||||| | | |||||| |||||||||||||||||    
T  18537865 attttaaaacataggggacgaaaagtgcagtttagcctaaat 18537824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 38716359 - 38716496
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | |||||| |        |||||  | |||||| ||||    
T  38716359 gattatggccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctattttttttatagggggtcaaaattgcaa 38716458  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
     ||||||||||||| |||| ||||| ||||||||||||    
T  38716459 cattttgaaacataggaggtgaaaagtgcagtttagcc 38716496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 15735230 - 15735367
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | |||||||||||| |||||| |||||||||| ||| | ||||||||       || |||   ||||||| ||||    
T  15735230 gattatggccccttttttgggacacgtggcgtcttctcaacaattttgggatgaaaggggccaaaattgccatttttttaaaaggggaccaaaattgcaa 15735329  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
     ||||| ||||||| | |||||||| || |||||||||    
T  15735330 cattttaaaacatagggggcgaaaagtggagtttagcc 15735367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 43301707 - 43301656
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  43301707 gccaaaatcgcaacatttcgaaacttaagaggcgaaaaatgcagtttagcct 43301656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 6763855 - 6763702
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgca 107  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||| ||||| |||  | | | ||||||||        ||||||   |||||||| ||    
T  6763855 gattacggccccttttttgggacacgtggcgtcttctcagcaattttgggataaaatggaccaaaattgccattttttttaataggggaccaaaatcaca 6763756  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcctaaattcaaataaac 161  Q
    | ||||| ||||||||  ||| |||||||||||||||||||||  |||||||||    
T  6763755 acattttaaaacataaagggcaaaaaatgcagtttagcctaaaaccaaataaac 6763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 25298939 - 25298804
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||| | ||| |||||||| |||||| |||||||| | ||| | |||||| |        ||||||| ||||||||||||    
T  25298939 gattatggccccttttttgggacacgtggcatcttctcaacaattttgggatgaagggggccaaaattgcaattttttttaataggaggccaaaatcgca 25298840  T
Q  108 atattttgaaacataagaggcgaaaaatgcagttta 143  Q
    | ||||| ||||||| | |||||||| |||| ||||    
T  25298839 acattttaaaacatagggggcgaaaagtgcacttta 25298804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 2986852 - 2986966
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||  ||||   ||||||||||||||||||| |||||||| | ||| | ||||||||        ||||||  ||||||||||||    
T  2986852 gattatggcccctttttttggacacatggcgtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggccaaaatcgca 2986951  T
Q  108 atattttgaaacata 122  Q
    | |||||||||||||    
T  2986952 acattttgaaacata 2986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 9051165 - 9051028
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgca 107  Q
    ||||||||||| ||||||| |||| | ||||||||||||||||||| | |||||| | ||| | ||||||||        ||||||    ||||||||||    
T  9051165 gattatggccc-ttttttgggacacggggcgtcttctcagcaattttgagatgaagggggccaaaattgccattttttttaataggggatcaaaatcgca 9051067  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    | ||||| ||||||| ||||||||||||||| |||||||    
T  9051066 acattttaaaacataggaggcgaaaaatgcactttagcc 9051028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 32677867 - 32677814
Alignment:
Q  95 agccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||||||||| ||||| |||| || ||||||||||||||| |||||||||    
T  32677867 agccaaaatcgcaacattttaaaacttaggaggcgaaaaatgcactttagccta 32677814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 17368383 - 17368523
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    |||||||||||||||||| |||| | |||||||||||| || |||  ||||||||| ||| | |||||| |       ||||||  |||||||| ||||     
T  17368383 attatggccccttttttgggacacgtggcgtcttctcaacattttttggatgaaaggggccaaaattgctatttttttaatagg-ggccaaaattgcaac 17368481  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagcctaaat 151  Q
    ||||||||||||| | |||||||| ||  |||||||| ||||    
T  17368482 attttgaaacatagggggcgaaaagtgttgtttagccaaaat 17368523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 22191220 - 22191347
Alignment:
Q  18 cccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcc-annnnnnnaataggaagccaaaatcgcaatattttga 116  Q
    |||||||||| |||| | |||| |||||||||||||| |||||||||| ||| | |||||||         ||||||   ||||||| |||| |||||||    
T  22191220 cccttttttgggacacgtggcgccttctcagcaattttgggatgaaaggggccaaaattgcctttttttttaataggggaccaaaattgcaacattttga 22191319  T
Q  117 aacataagaggcgaaaaatgcagtttag 144  Q
    |||||| |||||||||| || |||||||    
T  22191320 aacataggaggcgaaaagtgtagtttag 22191347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 36464527 - 36464577
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    ||||||||||| |||||||||| || |||||||||| ||||||||| ||||    
T  36464527 caaaatcgcaacattttgaaacttaggaggcgaaaagtgcagtttaaccta 36464577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 25884228 - 25884172
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaatt 152  Q
    ||||||||||||| ||||| |||| || | |||||||  ||||||||||||||||||    
T  25884228 gccaaaatcgcaacattttaaaacttagggggcgaaatgtgcagtttagcctaaatt 25884172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 36464441 - 36464493
Alignment:
Q  12 tatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaa 64  Q
    ||||||||||||||||||||| | | | ||||||||||||||| |||| ||||    
T  36464441 tatggccccttttttgagacacgtgacatcttctcagcaattttgggacgaaa 36464493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 24597653 - 24597513
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||| |||||||| | ||| | ||||||||       ||||||  ||||||||| |||    
T  24597653 gattatggccccttgtttgagacacgtggcgtcttctcagcaattttgggatgaagg-ggccaaaattgccatttttttaatagggggccaaaatcacaa 24597555  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
     ||||||||||||| |||||||||| |||| |||||||||||    
T  24597554 cattttgaaacataggaggcgaaaagtgcactttagcctaaa 24597513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 21224490 - 21224352
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||  ||||||||| ||| | |||||| |       ||||||   ||||||| ||||    
T  21224490 gattatggccctttttttgagacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctatttttttaataggggaccaaaattgcaa 21224391  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||||||||||||| |||||||||||||||||||||||    
T  21224390 cattttgaaacataag-ggcgaaaaatgcagtttagccta 21224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 19195351 - 19195213
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||  ||||||||| ||| | |||||| |       ||||||   ||||||| ||||    
T  19195351 gattatggccccttttttgggacatgtggcgtcttctcaacaatttttggatgaaaggggccaaaattgctatttttttaataggggaccaaaattgcaa 19195252  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    |||||||||||||| | || |||||||||||||||||||    
T  19195251 tattttgaaacatagggggtgaaaaatgcagtttagcct 19195213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 27869333 - 27869190
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| ||||   ||||||||||||||||||| |||||||| ||||| | ||||| ||       ||||||  | |||||||||||    
T  27869333 gattatggccccttttttgggacacatggcgtcttctcagcaattttgggatgaaggaggccaaaattgtcatttttttaatagggggtcaaaatcgcaa 27869234  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaaatt 152  Q
     ||||||||||||| | |||||||| |||| |||||||| ||||    
T  27869233 cattttgaaacatagggggcgaaaagtgcactttagccttaatt 27869190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 8526962 - 8527099
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||   ||| | ||||||||       ||||||  |||||||||||||     
T  8526962 attatggccccttttttgagacacgtggcatcttctcagcaattttgggatgaagagggccaaaattgccatttttttaatagggggccaaaatcgcaac 8527061  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    ||||||||| ||| | |||||||| |||| ||||||||    
T  8527062 attttgaaatatagggggcgaaaagtgcactttagcct 8527099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 13577923 - 13577811
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    ||||||||||||||||||  ||| | ||||||||||||||||||| |||||||||| ||| | ||||||||       ||||||  |||||||||||||     
T  13577923 attatggccccttttttggaacacgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccatttttttaatagggggccaaaatcgcaac 13577824  T
Q  110 attttgaaacata 122  Q
    |||||||||||||    
T  13577823 attttgaaacata 13577811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 31494076 - 31494214
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    |||||||||||||||||||  ||| | |||||||||||||||||||  ||||||||| ||| | ||||||||        ||||||  ||||||||||||    
T  31494076 gattatggccccttttttggaacacgtggcgtcttctcagcaattttaggatgaaaggggccaaaattgccattttttttaatagggggccaaaatcgca 31494175  T
Q  108 atattttgaaacataagag-gcgaaaaatgcagtttagcc 146  Q
    | |||||||||||| |||| ||||||||||||||||||||    
T  31494176 acattttgaaacat-agagtgcgaaaaatgcagtttagcc 31494214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 11843315 - 11843177
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgcaa 108  Q
    |||||||||||||||||   | | | ||||||||||||||||||| |||||||||| ||| | ||||||||        |||||| ||||||||||||||    
T  11843315 attatggcccctttttttgaatacgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccattttttttaatagggagccaaaatcgcaa 11843216  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
     ||||||||||||| | ||||| || |||||||||||||    
T  11843215 cattttgaaacatagggggcgagaagtgcagtttagcct 11843177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 6650676 - 6650744
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattg 77  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||| |||| ||||| ||||| |||||    
T  6650676 gattatggcccctgttttgagacatgtggcgtcttctcatcaattttgggacgaaaggggctaaaattg 6650744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 20636785 - 20636923
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||| ||||||||||| |||| | ||||| ||||||||||||| |||||| ||| ||| | ||||||||        ||||||  | ||||||||||    
T  20636785 gattatgaccccttttttgggacacgtggcgttttctcagcaattttgggatg-aaggggccaaaattgccatttttttaaatagggggtcaaaatcgca 20636883  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    | ||||||||||||| | |||||||| |||| ||||||||    
T  20636884 acattttgaaacatagggggcgaaaagtgcactttagcct 20636923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 48176101 - 48175958
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgca 107  Q
    ||||||| |||||||| || |||| | ||| |||||| |||||||| |||||||||| ||| | |||||| |        ||||||  ||||||||||||    
T  48176101 gattatgaccccttttctgggacacgtggcatcttctgagcaattttgggatgaaaggggccaaaattgctattttttctaatagggggccaaaatcgca 48176002  T
Q  108 atattttgaaacataagaggcgaaaaa-tgcagtttagcctaaa 150  Q
    | ||| ||||||||| | ||||||||| ||||||||||||||||    
T  48176001 acattatgaaacatagggggcgaaaaagtgcagtttagcctaaa 48175958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 19493484 - 19493622
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||| ||||  |||| | |||||||||||||| |||| |||||||||| ||| | |||||| |       ||||||  | |||||||||||    
T  19493484 gattatggcccctgttttaggacacgtggcgtcttctcagccattttgggatgaaaggggccaaaattgcta-ttttttaatagggggtcaaaatcgcaa 19493582  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||| |||| |||  |||||||||||||||||| ||||    
T  19493583 cattttaaaacttaaagggcgaaaaatgcagtttaaccta 19493622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 17305939 - 17305987
Alignment:
Q  17 ccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||||||| |||||| |||||||||||| |||||| ||||||||||    
T  17305939 ccccttttttgggacatgtggcgtcttctcatcaattttgggatgaaag 17305987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 36746641 - 36746585
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||| ||||||||||| |||| | |||||||||||| |||||| ||||||||||    
T  36746641 gattatgaccccttttttgggacacgtggcgtcttctcaacaattttgggatgaaag 36746585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 23080865 - 23080818
Alignment:
Q  99 aaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    ||||||||||||||||||||| |||| ||| |||| ||||||||||||    
T  23080865 aaaatcgcaatattttgaaacttaaggggcaaaaagtgcagtttagcc 23080818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 21225627 - 21225573
Alignment:
Q  97 ccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaat 151  Q
    |||||||| ||| ||||| |||| || |||||||||| |||||||||||||||||    
T  21225627 ccaaaatcacaacattttaaaacttaggaggcgaaaattgcagtttagcctaaat 21225573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 41452387 - 41452318
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgc 78  Q
    ||||||| ||||||||||| |||| | | |||||||||||||||||  ||||||||| ||| | ||||||    
T  41452387 gattatgaccccttttttgggacacgtgtcgtcttctcagcaatttttggatgaaaggggccaaaattgc 41452318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 2331179 - 2331235
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||||||  ||||||| |||| | |||||||||||||||||||  |||||||||    
T  2331179 gattatggcctattttttgggacaagtggcgtcttctcagcaatttttggatgaaag 2331235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 4193717 - 4193761
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||||||||||||||||||| | | |||||| ||||||||||    
T  4193717 attatggccccttttttgagacacgtgacgtcttttcagcaattt 4193761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 19493369 - 19493320
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaat 151  Q
    |||||||||||||||||||||    |||| |||||||| |||||||||||||||    
T  19493369 caaaatcgcaatattttgaaa----agagacgaaaaatacagtttagcctaaat 19493320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 21225803 - 21225850
Alignment:
Q  99 aaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    |||||||||| ||||| |||| |||| ||||||||||||||||||||||    
T  21225803 aaaatcgcaacatttt-aaacttaagtggcgaaaaatgcagtttagcct 21225850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 21264194 - 21264134
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggc 69  Q
    |||| ||| |||| |||||||||||| | ||||||||||||||||   |||||||||||||    
T  21264194 gattgtggaccctattttgagacatgtgacgtcttctcagcaattcttggatgaaagaggc 21264134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 33237551 - 33237495
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||| || || ||||| |||| | ||||||||||||||||||| ||||||||||    
T  33237551 gattatgaccactgttttgggacacgtggcgtcttctcagcaattttgggatgaaag 33237495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 34834092 - 34834229
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    |||||||||||||||||| |||| | ||||||||||||||||||| ||||||||   ||| | ||||||||       ||||||| | ||||||||||||    
T  34834092 attatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaagtgggccaaaattgccatttttttaataggaggtcaaaatcgcaat 34834191  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    ||||| ||||||||| |||||||| |||| ||||||||    
T  34834192 attttaaaacataaggggcgaaaagtgcactttagcct 34834229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 35102628 - 35102489
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||||||||||||||| |||| | ||||||||||||||||||| |||||||| | ||| | ||||||||        ||||||  || ||||||||||    
T  35102628 attatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggctaaaatcgcaa 35102529  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||||||||||| | |||||||| |||| |||||||||    
T  35102528 cattttgaaacatagggggcgaaaagtgcactttagccta 35102489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 18749234 - 18749095
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||| ||||||||||| |||||| ||| |||||| | ||||||  | ||||||| ||| | |||||| |       ||||||  |||||||| ||||    
T  18749234 gattatgtccccttttttgggacatgtggcttcttcttatcaatttttgtatgaaaggggccaaaattgctatttttttaatagggggccaaaattgcaa 18749135  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||| ||||||||| |||||||| ||||||||||||||    
T  18749134 cattttaaaacataaggggcgaaaagtgcagtttagccta 18749095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 32451892 - 32451948
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||  |||||||||    
T  32451892 gattatgaccccttttttgagacatgtggcgtcttctcaacaatttttggatgaaag 32451948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 31210960 - 31211095
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||| || ||||||||| |||| | || |||||||||||||||| |||||||||| ||| | ||||||||       |||||| |  |||||||||||    
T  31210960 gattatagcaccttttttgggacacgtggtgtcttctcagcaattttgggatgaaaggggccaaaattgcca-ttttttaataggga-tcaaaatcgcaa 31211057  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    |||||||||||||| | ||| |||| |||| |||||||    
T  31211058 tattttgaaacatagggggccaaaagtgcactttagcc 31211095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 14572316 - 14572247
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgc 78  Q
    ||||||||||| ||||||| |||||| ||| |||||||||||||||  ||||||||| ||| | ||||||    
T  14572316 gattatggccctttttttgggacatgtggcatcttctcagcaatttttggatgaaaggggccaaaattgc 14572247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 18791523 - 18791594
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca 80  Q
    ||||||||||||||||||  |||| | |||||||||||| |||||| |||||||| | ||| | ||||||||    
T  18791523 gattatggccccttttttaggacacgtggcgtcttctcaacaattttgggatgaagggggccaaaattgcca 18791594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 4597542 - 4597403
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||||||||||||||| |||||| |||||||| |||| ||||| ||| |||| | ||| | ||||| ||        ||||||   ||||||||||||    
T  4597542 attatggccccttttttgggacatgtggcgtcttttcagtaattttgggttgaagggggccaaaattgtcattttttttaataggggaccaaaatcgcaa 4597443  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||||||||||| | |||||||| |||| |||| ||||    
T  4597442 cattttgaaacatagggggcgaaaagtgcactttatccta 4597403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 8412816 - 8412754
Alignment:
Q  88 aataggaagccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    |||||| |||||||||||||| |||||||||| |||| |||| ||| || | |||||||||||    
T  8412816 aatagggagccaaaatcgcaacattttgaaacttaaggggcggaaagtggactttagcctaaa 8412754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 15298738 - 15298792
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    ||||||||||||| |||||||||||||   ||||||||||||| |||| ||||||    
T  15298738 gccaaaatcgcaacattttgaaacatagagggcgaaaaatgcactttaacctaaa 15298792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 24603527 - 24603581
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaa 63  Q
    ||||||||||||||||||  ||||   ||||||||||||||||||| ||||||||    
T  24603527 gattatggcccctttttttggacacatggcgtcttctcagcaattttgggatgaa 24603581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 26710445 - 26710391
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaa 63  Q
    ||||||||||||||||||| |||| | ||| ||||||||| ||||| ||||||||    
T  26710445 gattatggccccttttttgggacacgtggcatcttctcagtaattttgggatgaa 26710391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 20863866 - 20863821
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||||||||||||||| ||||   |||||||||||||||||||    
T  20863866 gattatggccccttttttgggacacatggcgtcttctcagcaattt 20863821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 22968407 - 22968460
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    ||||||||||||| |||||||||| |||| |||||||| || | ||||||||||    
T  22968407 gccaaaatcgcaacattttgaaacttaaggggcgaaaagtgaactttagcctaa 22968460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 23819986 - 23819933
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    ||||||||||||| |||||||||| |||| |||||||| || | ||||||||||    
T  23819986 gccaaaatcgcaacattttgaaacttaaggggcgaaaagtgaactttagcctaa 23819933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 25819850 - 25819895
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||| ||||||||||| |||| | |||||||||||||||||||    
T  25819850 gattatgaccccttttttgggacacgtggcgtcttctcagcaattt 25819895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 34528314 - 34528454
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||||||  || ||||| |||||| |  |||||||||||||||| |||| ||||| ||| | ||||| ||       ||||||| |||||||||||||    
T  34528314 gattatggcgactgttttgggacatgtgatgtcttctcagcaattttgggacgaaaggggccaaaattgtcatttttttaataggaggccaaaatcgcaa 34528413  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
     ||||||| || || | ||| |||| ||| ||||||||||||    
T  34528414 cattttgatacttagggggcaaaaagtgc-gtttagcctaaa 34528454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 15795480 - 15795624
Alignment:
Q  6 tgggattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcg 105  Q
    |||||||||| ||| ||||||  |||||| |||||||||||| |||||| |||| ||||||||||| ||| || |       |||||||  |||||||||    
T  15795480 tgggattatgacccattttttaggacatgtggcgtcttctcatcaattttgggacgaaagaggctaaaatcgc-atttttttaataggagaccaaaatcg 15795578  T
Q  106 caatattttgaaacataagaggcg-aaaaatgcagtttagcctaaa 150  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  15795579 caatattttgaaacttaagaggcgaaaaaatgcagtttagcctaaa 15795624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 13826557 - 13826418
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||| |||||||||||| |||| | ||||||||||||||||||| |||||||||| ||| | ||||||||       ||||||  | |||||||||||    
T  13826557 gattatagccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccatttttttaatagggggtcaaaatcgcaa 13826458  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||| ||||||| | |||||||| |||| |||||||||    
T  13826457 catttttaaacatagggggcgaaaagtgcactttagccta 13826418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 15058956 - 15058819
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||| |||||||||||| |||| | ||||||||||||||||||| |||||||||| ||| | | ||||||       ||||||  |||||||||||||    
T  15058956 gattatagccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaaggggccaaagttgccatatttttaatagg-ggccaaaatcgcaa 15058858  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
     ||||||||||||| | ||| |||| |||| ||||||||    
T  15058857 cattttgaaacatagggggccaaaagtgcactttagcct 15058819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 43793766 - 43793629
Alignment:
Q  12 tatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgcaata 110  Q
    |||| ||||||||||| |||||| ||||||||||||||||||| |||| ||||  ||| | ||||||||        ||||||  ||||||||||||| |    
T  43793766 tatgaccccttttttgggacatgtggcgtcttctcagcaattttgggacgaaatgggccaaaattgccattttttttaatagggggccaaaatcgcaaca 43793667  T
Q  111 ttttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||| ||||||| | |||||||| ||||||||||||||    
T  43793666 ttttaaaacatagggggcgaaaagtgcagtttagccta 43793629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 47869829 - 47869958
Alignment:
Q  18 cccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaatattttgaa 117  Q
    ||||||||||  ||| | ||||||||||||||||||| |||||||| ||||| ||||||||||       ||||||  ||||||||| ||| ||||||||    
T  47869829 cccttttttggaacacgtggcgtcttctcagcaattttgggatgaaggaggccagaattgccatttttttaatagggggccaaaatcacaacattttgaa 47869928  T
Q  118 acataagaggcgaaaaatgcagtttagcct 147  Q
    | ||| | ||| |||| |||| ||||||||    
T  47869929 atatagggggcaaaaattgcactttagcct 47869958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 27018381 - 27018435
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaa 64  Q
    |||||||||||||||||| |||| | ||||||||||||||||||| |||||||||    
T  27018381 attatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaa 27018435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 13397813 - 13397759
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaa 63  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  |||||||    
T  13397813 gattatggccccttttttgggacacgtggcgtcttctcagcaattttcggatgaa 13397759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 51291307 - 51291262
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||    
T  51291307 gattatggccccttttttgggacatgtggcgtcttctcaccaattt 51291262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 4433233 - 4433181
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    ||||||||||||| ||| ||||||||| | |||||||| ||||||||||||||    
T  4433233 gccaaaatcgcaacattatgaaacatagggggcgaaaagtgcagtttagccta 4433181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 5304485 - 5304414
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca 80  Q
    ||||||||||| ||||||| |||| | ||||||||||||||||||| | |||||| | ||| | ||||||||    
T  5304485 gattatggcccattttttgggacacgtggcgtcttctcagcaattttgcgatgaagggggccaaaattgcca 5304414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 35475455 - 35475510
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaa 64  Q
    ||||||| ||||||||||| |||| | |||||||||||||||||||  ||||||||    
T  35475455 gattatgaccccttttttgggacacgtggcgtcttctcagcaattttaggatgaaa 35475510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 45633486 - 45633435
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    |||||||||||||||||||||| || | |||||||| || ||||||||||||    
T  45633486 caaaatcgcaatattttgaaacttagggggcgaaaagtgtagtttagcctaa 45633435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 35475349 - 35475287
Alignment:
Q  88 aataggaagccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    |||||| |||||||||||||| ||||| |||| ||   ||||||||||| |||||||||||||    
T  35475349 aatagggagccaaaatcgcaacattttaaaacttagagggcgaaaaatgaagtttagcctaaa 35475287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 41877270 - 41877332
Alignment:
Q  88 aataggaagccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    |||||| |||||||||||||| |||||||||| ||   |||||||| || |||||||||||||    
T  41877270 aatagggagccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcctaaa 41877332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 55780437 - 55780383
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    ||||||||||||| ||||  |||| |||| ||||||||||| |||||||||||||    
T  55780437 gccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagtttagcctaaa 55780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 55844617 - 55844563
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    ||||||||||||| ||||  |||| |||| ||||||||||| |||||||||||||    
T  55844617 gccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagtttagcctaaa 55844563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 1588463 - 1588414
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    ||||||||||||||||| ||||||||  | ||||||||||| ||||||||    
T  1588463 caaaatcgcaatattttaaaacataaaggacgaaaaatgcaatttagcct 1588414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 13394668 - 13394620
Alignment:
Q  15 ggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaa 63  Q
    ||||||||||||| |||| | |||||||||||||||||||  |||||||    
T  13394668 ggccccttttttgggacacgtggcgtcttctcagcaattttcggatgaa 13394620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 25618765 - 25618710
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||||||||||||| | |||| | |||||||||||||||||||  |||||||||    
T  25618765 gattatggcccctttttgg-gacacgtggcgtcttctcagcaatttttggatgaaag 25618710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 36729214 - 36729170
Alignment:
Q  21 ttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||| |||||| ||||||||||||| ||||| ||||||||||    
T  36729214 ttttttgggacatgtggcgtcttctcagtaattttgggatgaaag 36729170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 19448 - 19585
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  ||||||||  ||| | ||||||||       ||||||  |||||||||| ||    
T  19448 gattatggccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaatgggccaaaattgccatttttttaatagggggccaaaatcgaaa 19547  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
     | |||||||| |||| |||||||||||||||||||||    
T  19548 cagtttgaaacttaaggggcgaaaaatgcagtttagcc 19585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 62072 - 62123
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    |||||||| |||| ||||||||||||| | || |||||||||||||||||||    
T  62072 gccaaaattgcaacattttgaaacatagggggtgaaaaatgcagtttagcct 62123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 13081060 - 13081201
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||||| || |||||||||||||||| |||||||| | ||| | ||||||||        ||||||  ||||||||||||    
T  13081060 gattatggccccttttttgggacatgtggagtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggccaaaatcgca 13081159  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    | ||||||||||||| ||||||||||  ||| ||||||||||    
T  13081160 acattttgaaacataggaggcgaaaagcgcactttagcctaa 13081201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 26628163 - 26628023
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||| ||| | ||||||||        ||||||  |||||||| |||    
T  26628163 gattatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccattttttttaatagggggccaaaattgca 26628064  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    | ||||||||||||| | |||||||| || |||||||||||    
T  26628063 acattttgaaacatagggggcgaaaagtgtagtttagccta 26628023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 32960769 - 32960641
Alignment:
Q  21 ttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaatattttgaaaca 120  Q
    ||||||| |||| | ||||||||||||| ||||| |||||||||| ||| | ||||||||       ||||||  |||||||| |||| |||||||||||    
T  32960769 ttttttgggacacgtggcgtcttctcagtaattttgggatgaaaggggccaaaattgccatttttttaataggg-gccaaaattgcaacattttgaaaca 32960671  T
Q  121 taagaggcgaaaaatgcagtttagcctaaa 150  Q
    || | |||||||||||||||||||||||||    
T  32960670 tagggggcgaaaaatgcagtttagcctaaa 32960641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 25179744 - 25179881
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||| |||||||| | ||| | ||||||||       |||| |  ||||| |||||||    
T  25179744 gattatggccccttttttgggaca--cggcgtcttctcagcaattttgggatgaagggggccataattgccatttttttaataaggggccaatatcgcaa 25179841  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||||||||||| | |||||||| |||| |||||||||    
T  25179842 cattttgaaacatagggggcgaaaagtgcactttagccta 25179881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 48907430 - 48907359
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca 80  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||| ||| | ||||||||    
T  48907430 gattatggccccttttttgggacacgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgcca 48907359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 3328951 - 3328812
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | |||||| |        ||||||  |||||||| | |    
T  3328951 gattatggccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctattttttttaatagggggccaaaattgta 3328852  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    | ||||||||||||| | |||||||| |||||||||||||    
T  3328851 acattttgaaacatagggggcgaaaagtgcagtttagcct 3328812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 22500733 - 22500594
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||||| |||||||||  |||| | ||||||||||||| |||||  ||||||||| ||||| |||||  |       ||||||  |||||||| ||||    
T  22500733 gattatggtccctttttttggacacgtggcgtcttctcagaaatttttggatgaaaggggctaaaattgatatttttttaatagggggccaaaattgcaa 22500634  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||||||||| | | |||||| ||||||||||||||    
T  22500633 tattttgaaacataggggccgaaaagtgcagtttagccta 22500594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 8339078 - 8338940
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    |||||||||| |||||||| |||| | ||||||||||||||||||| |||||||| | ||| | ||||||||        ||||||  | ||||||||||    
T  8339078 gattatggcctcttttttgggacacgtggcgtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggtcaaaatcgca 8338979  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    | ||||||||||||| | |||||||| |||| |||||||    
T  8338978 acattttgaaacatagggggcgaaaagtgcactttagcc 8338940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 28155020 - 28154882
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||| ||||||| |||| | |||||||||||||||||||  ||||||||| ||| | ||||||||        ||||||  |||||||| |||    
T  28155020 gattatggccctttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgccattttttttaatagggggccaaaattgca 28154921  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    | ||||||||||||| | |||||||| || |||||||||    
T  28154920 acattttgaaacatagggggcgaaaagtgtagtttagcc 28154882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 34878666 - 34878525
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgcaa 108  Q
    |||||||| ||||||||| |||| | ||||||||||||||||||| | |||||||  ||  | ||||||||        ||||||  |||||||||||||    
T  34878666 attatggcaccttttttgggacacgtggcgtcttctcagcaattttgagatgaaatgggtcaaaattgccattttttttaatagggggccaaaatcgcaa 34878567  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
     ||||||||||||| | ||||| || ||||||||||||||||    
T  34878566 cattttgaaacatagggggcgagaagtgcagtttagcctaaa 34878525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 6927636 - 6927770
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||| ||||||||||| |||| | ||| |||||| |||||||| |||||||||| ||||| |||||| |       ||||||  |||||||| ||||    
T  6927636 gattatgaccccttttttgggacacgtggcatcttctgagcaattttgggatgaaaggggctaaaattgctatttttttaatagggggccaaaattgcaa 6927735  T
Q  109 tattttgaaacataagaggcgaaaaatgcagttta 143  Q
     ||| ||||||||| | |||||||| ||| |||||    
T  6927736 cattatgaaacatagggggcgaaaagtgctgttta 6927770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 8542777 - 8542830
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaa 63  Q
    |||||||||||||||||| |||| | ||||||||||||||||||| ||||||||    
T  8542777 attatggccccttttttgtgacacgtggcgtcttctcagcaattttgggatgaa 8542830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 4522120 - 4522191
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca 80  Q
    |||||| |||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | ||||||||    
T  4522120 gattattgccccttttttgggacacgtggcgtcttctcagcaattttaggatgaaaggggccaaaattgcca 4522191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 25022801 - 25022662
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||| |||||||| || |||| | ||| |||||| |||||||| |||||||||| ||| | |||||| |       || |||  |||||||||||||    
T  25022801 gattatgaccccttttctgggacacgtggcatcttctgagcaattttgggatgaaaggggccaaaattgctatttttttaacagggggccaaaatcgcaa 25022702  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||| ||||||||| | ||| |||| |||| |||||||||    
T  25022701 tattatgaaacatatggggcaaaaagtgcactttagccta 25022662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 3821048 - 3821186
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgca 107  Q
    ||||||| ||||||||||| |||||| || ||||||||||||||||  |||||||| |||||  ||||   |        ||||||| ||||||||||||    
T  3821048 gattatgaccccttttttgggacatgtggtgtcttctcagcaattttaggatgaaaaaggctgaaattttaatttcttttaataggaggccaaaatcgca 3821147  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    | ||||| |||  ||||||||||||| |||| |||||||    
T  3821148 acattttcaaatttaagaggcgaaaagtgcattttagcc 3821186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22447790 - 22447738
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||| |||| ||||||||||||| | |||||||| ||||||||||||||    
T  22447790 gccaaaattgcaacattttgaaacatagggggcgaaaagtgcagtttagccta 22447738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 27852889 - 27852753
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||| | |||| | |||||||||||| |||||| ||| |||| | ||| | ||||||||       ||||||  || ||||| ||||    
T  27852889 gattatggcccctttttgg-gacacgtggcgtcttctcaacaattttgggctgaagggggccaaaattgccatttttttaatagggggctaaaattgcaa 27852791  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
     ||||||||||||| | |||||||| |||| |||||||    
T  27852790 cattttgaaacatagggggcgaaaagtgcactttagcc 27852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 40836434 - 40836486
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    ||||||||||| ||||| |||| || | |||||||||||||||||||||||||    
T  40836434 caaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagcctaaa 40836486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 46387718 - 46387579
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    ||||||||||||||||||  |||   |||||||||||| |||||| | |||||||  ||| | |||||| |       |||| |  |||||||||||||     
T  46387718 attatggccccttttttggaacacatggcgtcttctcatcaattttgagatgaaatgggccaaaattgcaattttttaaataaggggccaaaatcgcaag 46387619  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    |||||||||| || ||||| |||||||||||||| ||||||    
T  46387618 attttgaaactta-gaggccaaaaatgcagtttaacctaaa 46387579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 3781124 - 3781182
Alignment:
Q  88 aataggaagccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    ||||||| |||||||||| || ||||| |||  ||||||||||||| ||||||||||||    
T  3781124 aataggaggccaaaatcgtaacattttaaaatttaagaggcgaaaagtgcagtttagcc 3781182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 26177094 - 26177025
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgc 78  Q
    |||||||||| |||||||| ||| || ||| ||||||||||||||| |||| |||| |||| | ||||||    
T  26177094 gattatggcctcttttttgggacttgtggcttcttctcagcaattttgggacgaaataggccaaaattgc 26177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 26628279 - 26628332
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    ||||||||||||| |||||||||| ||   ||||||||||| ||||||||||||    
T  26628279 gccaaaatcgcaacattttgaaacttagagggcgaaaaatgaagtttagcctaa 26628332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 28173779 - 28173726
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    ||||||||||||| ||| ||||||||| | |||||||| |||| ||||||||||    
T  28173779 gccaaaatcgcaacattatgaaacatagggggcgaaaagtgcactttagcctaa 28173726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 33279723 - 33279678
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||| ||| |||||||||||| | |||||||||||||||||||    
T  33279723 gattatgaccctttttttgagacacgtggcgtcttctcagcaattt 33279678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 40836316 - 40836271
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||||||||||||||| |||| | |||| ||||||||||||||    
T  40836316 gattatggccccttttttgggacacgtggcggcttctcagcaattt 40836271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 43668594 - 43668639
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||| ||||| ||||| |||||| |||||||||||||||||||    
T  43668594 gattatgacccctgttttgggacatgtggcgtcttctcagcaattt 43668639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 31039115 - 31039055
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggc 69  Q
    |||||| |||||||||||   ||||| |||||||||||||||||||  ||| |||||||||    
T  31039115 gattatagccccttttttagaacatgtggcgtcttctcagcaatttttggacgaaagaggc 31039055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 3097 - 2961
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaat 109  Q
    ||||||||| |||||||| |||| | |||||||||||| |||||| |||||||| | ||| | ||||||||       ||||||  |||||||||||||     
T  3097 attatggcctcttttttgggacacgtggcgtcttctcatcaattttgggatgaagggggccaaaattgccatttttttaatagggggccaaaatcgcaac 2998  T
Q  110 attttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    ||||||||||||| | |||||||| |||| |||||||    
T  2997 attttgaaacatagggggcgaaaagtgcactttagcc 2961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 8802538 - 8802394
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||| |||||||| | ||| | ||||||||        ||||||  ||||||||||||    
T  8802538 gattatggccccttttttggaacatgtggcgtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggccaaaatcgca 8802439  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcctaaatt 152  Q
    | ||||| ||||||| | | |||||| |||| |||||||||||||    
T  8802438 acattttaaaacatacgggacgaaaagtgcactttagcctaaatt 8802394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 5192409 - 5192271
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  |||| |||| ||| | |||||| |       ||||||  |||||||| ||||    
T  5192409 gattatggccccttttttgggacacgtggcgtcttctcagcaatttttggataaaaggggccaaaattgctatttatttaatagggggccaaaattgcaa 5192310  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
     ||||||||||||| | |||||||| || ||||||||||    
T  5192309 cattttgaaacatagggggcgaaaagtgaagtttagcct 5192271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 4519005 - 4518866
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | |||||||||||| |||||| | |||| ||| ||| | ||||||||       ||||||  |||||||||||||    
T  4519005 gattatggccccttttttgggacacgtggcgtcttctcaacaattttgagatg-aaggggccaaaattgccatttttttaatagggggccaaaatcgcaa 4518907  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    |||||| ||| ||| | |||||||| |||| ||||||||||    
T  4518906 tattttaaaatatagggggcgaaaagtgcactttagcctaa 4518866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 21929972 - 21929842
Alignment:
Q  22 tttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgcaatattttgaaaca 120  Q
    |||||| |||| | ||||||||||||||||||| |||||||| | ||| | |||||| |        |||||| ||||||||||||||  ||||||||||    
T  21929972 tttttgggacacgtggcgtcttctcagcaattttgggatgaagggggccaaaattgcaattttttttaatagggagccaaaatcgcaacgttttgaaaca 21929873  T
Q  121 taagaggcgaaaaatgcagtttagcctaaat 151  Q
    || | ||||||||||||| ||||||||||||    
T  21929872 tagggggcgaaaaatgcactttagcctaaat 21929842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 44147136 - 44147278
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgca 107  Q
    ||||||| ||||||||||| || |   ||||||||||||||||||| ||||| || ||||| | ||||| ||        ||||||  ||||||||||||    
T  44147136 gattatgaccccttttttgggatacatggcgtcttctcagcaattttgggataaaggaggccaaaattgtcattttttttaatagggggccaaaatcgca 44147235  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
    ||||||||||||||| | |||||||| |||| |||||||||||    
T  44147236 atattttgaaacatatggggcgaaaagtgcactttagcctaaa 44147278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 19391525 - 19391386
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | |||||| |        ||||||   ||||||| |||    
T  19391525 gattatggccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctattttttttaataggggaccaaaattgca 19391426  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    | |||||||||||| || |||||||| ||||||||||||||    
T  19391425 acattttgaaacat-aggggcgaaaagtgcagtttagccta 19391386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 4807650 - 4807598
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    |||||||| |||| ||||||||||||| |||||||||| ||||||||||||||    
T  4807650 gccaaaattgcaacattttgaaacataggaggcgaaaagtgcagtttagccta 4807598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 3380257 - 3380199
Alignment:
Q  88 aataggaagccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    |||||| |||||||||||||| |||||||||| |||  || ||||||||||||||||||    
T  3380257 aatagggagccaaaatcgcaacattttgaaacttaaagggtgaaaaatgcagtttagcc 3380199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 38630221 - 38630359
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||| ||||||||||| |||| | ||||||||||||||||||| | |||||| | ||| | ||||||||        ||||||  | ||||||||||    
T  38630221 gattatgaccccttttttgggacacgtggcgtcttctcagcaattttgagatgaagggggccaaaattgccattttttttaatagggggtcaaaatcgca 38630320  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
    | ||||| |||||||  ||||||||||| || |||||||    
T  38630321 acattttaaaacatagaaggcgaaaaatacactttagcc 38630359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 23565255 - 23565311
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||||||| |||||| | ||||| |||||||||||||||||||  |||||||||    
T  23565255 gattatggcccttttttttaaacatgtggcgtcttctcagcaatttttggatgaaag 23565311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 4807859 - 4807908
Alignment:
Q  100 aaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    ||||||||| |||||||||| ||| ||||||||| || ||||||||||||    
T  4807859 aaatcgcaacattttgaaacttaaaaggcgaaaagtgaagtttagcctaa 4807908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 19924431 - 19924476
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||| ||||||||||| |||| | |||||||||||||||||||    
T  19924431 gattatgaccccttttttgggacacgtggcgtcttctcagcaattt 19924476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 21666411 - 21666273
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||||||||||||||| ||||   ||||||||||||||||||| | || ||| | ||| | ||||||||        |||||| ||| |||||| |||    
T  21666411 attatggccccttttttgggacacatggcgtcttctcagcaattttgagacgaagggggccaaaattgccattttttttaatagggagctaaaatcacaa 21666312  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
     |||| ||||| |||| | |||||| |||||||||||||    
T  21666311 catttcgaaacttaagggacgaaaagtgcagtttagcct 21666273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 31268453 - 31268490
Alignment:
Q  17 ccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  31268453 ccccttttttgggacatgcggcgtcttcttagcaattt 31268490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 7117251 - 7117211
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagca 50  Q
    |||||||||| ||||||| |||||| |||||||||||||||    
T  7117251 attatggccctttttttgggacatgtggcgtcttctcagca 7117211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 18253024 - 18252968
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    |||||||||| || ||||| |||| | ||||||||||||||||||| |||| |||||    
T  18253024 gattatggccactgttttgggacacgtggcgtcttctcagcaattttgggacgaaag 18252968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 24196430 - 24196566
Alignment:
Q  12 tatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgcaata 110  Q
    |||||||||||||||| |||| | |||||||||||||||||||  ||| ||||| ||| | ||||||||        ||||||  ||||||||||||| |    
T  24196430 tatggccccttttttgggacacgtggcgtcttctcagcaatttttggacgaaaggggccaaaattgccattttttttaatagggggccaaaatcgcaaca 24196529  T
Q  111 ttttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    |||| ||||||| |||||||||| |||||||||||||    
T  24196530 ttttaaaacataggaggcgaaaagtgcagtttagcct 24196566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 4059660 - 4059521
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    |||||||| || ||||||| |||| | ||||||||||||||||||| |||||||||| ||| | |||||| |        ||||||  ||||||||||||    
T  4059660 gattatggtccattttttgggacacgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgcaattttttttaatagggggccaaaatcgca 4059561  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    | ||||||||||||| | |||||||| |||| ||||||||    
T  4059560 acattttgaaacatagggggcgaaaagtgcactttagcct 4059521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 3616965 - 3617102
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||  |||| |||| ||| | |||||| |       ||||||  || ||||| ||||    
T  3616965 gattatggccccttttttgggacacgtggcgtcttctcagcaatttttggataaaaggggccaaaattgctatttatttaatagggggcgaaaattgcaa 3617064  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcc 146  Q
     ||||||||||||| | |||||||| || |||||||||    
T  3617065 cattttgaaacatagggggcgaaaagtgaagtttagcc 3617102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 27092989 - 27092849
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||||||||||||||  ||| | ||||||||||||||||||| |||||||||  ||| | ||||||||        ||||||  |||||||||| ||    
T  27092989 attatggccccttttttggaacacgtggcgtcttctcagcaattttgggatgaaatgggccaaaattgccattttttttaatagg-ggccaaaatcgtaa 27092891  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
     ||||||||||||| | ||||| || ||||||||||||||||    
T  27092890 cattttgaaacatagggggcgagaagtgcagtttagcctaaa 27092849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 48472001 - 48471864
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    |||||||| |||||||||| |||| | ||||||||||||||||||| |||||||| | ||| | ||||||||        ||||||  ||||||||||||    
T  48472001 gattatggtcccttttttgggacacgtggcgtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggccaaaatcgca 48471902  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagc 145  Q
    | ||||||||||||| | | |||||| |||| ||||||    
T  48471901 acattttgaaacataggggacgaaaagtgcactttagc 48471864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 19078063 - 19077992
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca 80  Q
    ||||||| ||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | ||||||||    
T  19078063 gattatgaccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgcca 19077992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 19125953 - 19125882
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca 80  Q
    ||||||| ||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | ||||||||    
T  19125953 gattatgaccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgcca 19125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 31084665 - 31084615
Alignment:
Q  97 ccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    |||||||||||||||||| |||| ||||||||||||| || ||||||||||    
T  31084665 ccaaaatcgcaatattttaaaacttaagaggcgaaaagtgtagtttagcct 31084615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 24962119 - 24962164
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||    
T  24962119 gattatggccccttttttgggacacgtggcgtcttctcagcaattt 24962164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 28920795 - 28920738
Alignment:
Q  9 gattatggcccc-ttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    |||||||||||| ||||||| |||||| |||||||||||||||||||  |||||||||    
T  28920795 gattatggcccccttttttgggacatgtggcgtcttctcagcaatttttggatgaaag 28920738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 2425390 - 2425531
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    ||||||| ||| |||| || |||| | ||| |||||| |||||||| |||||||||  ||| | |||||| |       ||||||  |||||||||||||    
T  2425390 gattatgacccattttctgggacacgtggcatcttctgagcaattttgggatgaaatgggccaaaattgctatttttttaatagggggccaaaatcgcaa 2425489  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagcctaaa 150  Q
     ||| ||||||||| | ||| |||| ||||||||||||||||    
T  2425490 cattatgaaacatagggggcaaaaagtgcagtttagcctaaa 2425531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 29182138 - 29182078
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggc 69  Q
    ||||||||||| |||||||||||| |  |||||||||||||||||| | || |||||||||    
T  29182138 gattatggcccattttttgagacacgttgcgtcttctcagcaattttgagacgaaagaggc 29182078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 2657767 - 2657818
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    |||||||||||||||||||||| || | |||||||| || ||||||||||||    
T  2657767 caaaatcgcaatattttgaaacttagggggcgaaaagtgtagtttagcctaa 2657818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 26605528 - 26605573
Alignment:
Q  98 caaaatcgcaatattttgaaacataagaggcgaaaaatgcagttta 143  Q
    |||||||| |||||||| |||| ||||||||||||| |||||||||    
T  26605528 caaaatcgtaatattttaaaacttaagaggcgaaaagtgcagttta 26605573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 28920905 - 28920958
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    ||||||||||||| |||||||||| || | |||||||| || ||||||||||||    
T  28920905 gccaaaatcgcaacattttgaaacttagggggcgaaaagtgaagtttagcctaa 28920958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 43706704 - 43706655
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagc 145  Q
    ||||||||||||| ||| ||||||||| | |||||||| |||||||||||    
T  43706704 gccaaaatcgcaacattatgaaacatagggggcgaaaagtgcagtttagc 43706655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 10685015 - 10685063
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttag 144  Q
    ||||||||  |||||||||||||| || | |||||||||||||||||||    
T  10685015 gccaaaattacaatattttgaaacttagggggcgaaaaatgcagtttag 10685063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 16551781 - 16551725
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||||||| | ||||| |||| | ||||||||||||||||||| |||| |||||    
T  16551781 gattatggcccttgttttgggacacgtggcgtcttctcagcaattttgggacgaaag 16551725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 24196311 - 24196259
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    ||||||||||||| |||||||||| || | |||||||| || |||||||||||    
T  24196311 gccaaaatcgcaacattttgaaacttagggggcgaaaagtggagtttagccta 24196259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 46432266 - 46432214
Alignment:
Q  96 gccaaaatcgcaatattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    ||||||||||||| ||| ||||||||| | |||||||| |||| |||||||||    
T  46432266 gccaaaatcgcaacattatgaaacatagggggcgaaaagtgcactttagccta 46432214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 25102 - 24972
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca-nnnnnnnaataggaagccaaaatcgca 107  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||| || ||||||| ||| | ||||||||        ||||||   |||||||||||    
T  25102 gattatggccccttttttgggacacgtggcgtcttctcagcaattttggtatgaaaggggccaaaattgccattttttttaataggggaccaaaatcgca 25003  T
Q  108 atattttgaaacataagaggcgaaaaatgca 138  Q
    ||||||| ||||||| |||||||||| ||||    
T  25002 atattttaaaacatatgaggcgaaaagtgca 24972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 2157 - 2296
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaa 108  Q
    |||||| |||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | |||||| |       |||||   |||||||| ||||    
T  2157 gattatagccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctatttttttaatagagggccaaaattgcaa 2256  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     ||||| ||||||  | |||||||| ||||||||||||||    
T  2257 cattttaaaacatggggggcgaaaagtgcagtttagccta 2296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 2187 - 2047
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca--nnnnnnnaataggaagccaaaatcgc 106  Q
    ||||||| ||||||||||| |||| | |||||||||||||||||||  ||||||||| ||| | |||||| |         ||||||  |||||||| ||    
T  2187 gattatgaccccttttttgggacacgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctatttttttttaatagggggccaaaattgc 2088  T
Q  107 aatattttgaaacataagaggcgaaaaatgcagtttagcct 147  Q
    || ||||| ||||||| | |||||||| |||||||||||||    
T  2087 aacattttaaaacatagggggcgaaaagtgcagtttagcct 2047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 455193 - 455249
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||| ||||||||||    
T  455193 gattatgacccattttttgggacatgtggcgtcttctcagcaattttgggatgaaag 455249  T

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Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 5787 - 5648
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgca 107  Q
    ||||||||||| ||||||| |||| | ||||||||| ||||||||| ||||| |||| | | | ||||||||        ||||||| |||||||| | |    
T  5787 gattatggccc-ttttttgggacacgtggcgtcttcgcagcaattttgggataaaagggaccaaaattgccattttttttaataggaggccaaaattgta 5689  T
Q  108 atattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
    | ||||||||||||| | |||||||| ||||||||||||||    
T  5688 acattttgaaacatagggggcgaaaagtgcagtttagccta 5648  T

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Target: scaffold0683 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 5259 - 5117
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgcca--nnnnnnnaataggaagccaaaatcgc 106  Q
    ||||||||||||||||||| ||||   | |||||||||||||||||  ||||||||| ||| | ||||||||         ||||||   ||||||| ||    
T  5259 gattatggccccttttttgggacacatgacgtcttctcagcaatttttggatgaaaggggccaaaattgccatttttttttaataggggaccaaaattgc 5160  T
Q  107 aatattttgaaacataagaggcgaaaaatgcagtttagcctaa 149  Q
    || ||||||||||||| | ||||||||||| | ||||||||||    
T  5159 aacattttgaaacatagggggcgaaaaatgtaatttagcctaa 5117  T

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Target: scaffold0267 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 3706 - 3649
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaaga 66  Q
    |||||| |||||||||||| |||| | || |||||||||||||||| |||||||||||    
T  3706 gattatagccccttttttgggacacgaggtgtcttctcagcaattttgggatgaaaga 3649  T

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Target: scaffold0150 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 6009 - 6138
Alignment:
Q  21 ttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnnaataggaagccaaaatcgcaatattttgaaaca 120  Q
    ||||||| |||| | ||| ||||||||||||||| |||||||| | ||| | ||||||||       ||||||  ||||||||||||| ||||  |||||    
T  6009 ttttttgggacacgtggcatcttctcagcaattttgggatgaagggggccaaaattgccatttttttaatagggggccaaaatcgcaacatttaaaaaca 6108  T
Q  121 taagaggcgaaaaatgcagtttagcctaaa 150  Q
    || | |||||||| | || |||||||||||    
T  6109 tagggggcgaaaagtacactttagcctaaa 6138  T

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Target: scaffold1875 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 893 - 754
Alignment:
Q  10 attatggccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaagaggctagaattgccannnnnnn-aataggaagccaaaatcgcaa 108  Q
    |||||| |||||| |||| |||||  |||||||||||| |||||| |||| ||| | ||| | ||||||||        ||||||  |||||||||||||    
T  893 attatgaccccttatttgggacatctggcgtcttctcaacaattttgggacgaagggggccaaaattgccattttttttaatagggggccaaaatcgcaa 794  T
Q  109 tattttgaaacataagaggcgaaaaatgcagtttagccta 148  Q
     |||| ||||| |||| || ||||| ||||||||||||||    
T  793 catttcgaaacttaaggggtgaaaagtgcagtttagccta 754  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 250656 - 250611
Alignment:
Q  9 gattatggccccttttttgagacatgcggcgtcttctcagcaattt 54  Q
    ||||||||||||||||||| | || | |||||||||||||||||||    
T  250656 gattatggccccttttttggggcacgtggcgtcttctcagcaattt 250611  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10095 - 10143
Alignment:
Q  17 ccccttttttgagacatgcggcgtcttctcagcaatttcgggatgaaag 65  Q
    ||||||||||| |||||| |||||||||||| |||||| |||| |||||    
T  10095 ccccttttttgtgacatgtggcgtcttctcaacaattttgggacgaaag 10143  T

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