View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14158_high_1 (Length: 477)
Name: NF14158_high_1
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14158_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 42961299 - 42960838
Alignment:
| Q |
1 |
cgccttataaattgtacttagttgaaaattaagcagttcatacatttaaaaatggtttacaatcacatgatgactgaaaatgagtaatgctaaatattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42961299 |
cgccttataaattgtacttagttgaaaattaagcagttcatacatttaaaaatggtttacaatcacatgatgactgaaaatgagtaatgctaaatattgg |
42961200 |
T |
|
| Q |
101 |
tgcaggaaaaagaccaaaagcaatgggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactaggaaatgatagggagagtgaagtgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42961199 |
tgcaggaaaaagaccaaaagcaatgggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactaggaaatgatagggagagtgaagtgatt |
42961100 |
T |
|
| Q |
201 |
gtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaacttgaaaatccctgtggtacttgaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42961099 |
gtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaacttgaaaatccctgtggtacttgaca |
42961000 |
T |
|
| Q |
301 |
acagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaacaatcattgatagaaacagttggtat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960999 |
acagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaacaatcattgatagaaacagttggtat |
42960900 |
T |
|
| Q |
401 |
taccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattc |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960899 |
taccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattc |
42960838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 101 - 356
Target Start/End: Original strand, 5503504 - 5503759
Alignment:
| Q |
101 |
tgcaggaaaaagaccaaaagcaatgggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactaggaaatgatagggagagtgaagtgatt |
200 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||| ||| |||||| | |||||||||| | | ||||||||||| |
|
|
| T |
5503504 |
tgcaggtaagagaccaaaagcaataggggttattttcaatgatgaaaatgggaaacaacatgaggcaaggttgggaaatgatatgcaaagtgaagtgata |
5503603 |
T |
|
| Q |
201 |
gtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaacttgaaaatccctgtggtacttgaca |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || ||||||||||| || |||| |||||| |||||||||| ||| | ||||| ||| ||| |
|
|
| T |
5503604 |
ttgtctagtggggcaattgggtctcctcaaatgctattgctaagtggaattggtcctaaagatgaacttcagaacttgaacatctcagtggtccttaaca |
5503703 |
T |
|
| Q |
301 |
acagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcct |
356 |
Q |
| |
|
| |||||||||||||| ||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
5503704 |
atccttttgttgggaagggaatgatagataatcctatgaacacagtttttgttcct |
5503759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University