View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14158_high_10 (Length: 217)

Name: NF14158_high_10
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14158_high_10
NF14158_high_10
[»] chr8 (1 HSPs)
chr8 (1-136)||(11007107-11007242)
[»] chr7 (2 HSPs)
chr7 (37-119)||(19225404-19225487)
chr7 (37-119)||(37518069-37518152)
[»] chr6 (1 HSPs)
chr6 (37-119)||(2539721-2539804)
[»] chr2 (3 HSPs)
chr2 (37-119)||(38065378-38065461)
chr2 (35-119)||(17474599-17474684)
chr2 (56-119)||(41510230-41510294)
[»] chr1 (3 HSPs)
chr1 (56-119)||(27795119-27795183)
chr1 (37-120)||(44572905-44572989)
chr1 (37-120)||(52744648-52744732)
[»] chr5 (1 HSPs)
chr5 (37-119)||(26898609-26898692)
[»] chr3 (1 HSPs)
chr3 (37-119)||(28873276-28873359)
[»] chr4 (1 HSPs)
chr4 (56-119)||(6228619-6228683)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11007107 - 11007242
Alignment:
Q  1 gagaagaacaaaacaaatgaaaatcaagagctgacagaaacttgcccataaaaagagaaaaaattcaagaacatgactcttagagaagaaacttcttact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| ||||||||||    
T  11007107 gagaagaacaaaacaaatgaaaatcaagagctgacagaaacttgctcataaaatgagaaaaaattcatcaacatgactcttagagaagagacttcttact 11007206  T
Q  101 ggactccacccctcaaaattttatcatttataccaa 136  Q
     |||||||||||||||||||||||| ||||| ||||    
T  11007207 agactccacccctcaaaattttatcgtttatgccaa 11007242  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 19225487 - 19225404
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaag-aacatgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    ||||||| |||| ||||  |||||||||||||| ||||||||||  | ||||| |||||||||| ||||||| |||||||||||    
T  19225487 gaaacttccccagaaaatcagaaaaaattcaaggaacatgactcccatagaaggaacttcttacaggactccgcccctcaaaat 19225404  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 37518152 - 37518069
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaagaac-atgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    ||||||| |||| ||||  |||||||||||||| || |||||||  | |||||| ||||||||| ||||||| |||||||||||    
T  37518152 gaaacttccccagaaaatcagaaaaaattcaaggaccatgactcccatagaagagacttcttacaggactccgcccctcaaaat 37518069  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 2539721 - 2539804
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaagaac-atgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    |||||||||||| ||||  |||||||||||||| || |||||||| | |||||  ||||||||| ||||||| |||||||||||    
T  2539721 gaaacttgcccagaaaatcagaaaaaattcaaggaccatgactctcatagaagtgacttcttacgggactccgcccctcaaaat 2539804  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 38065461 - 38065378
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaagaa-catgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    ||||||| |||||||||  |||||||||||||| | |||||||| |  |||||| ||||||||| ||||||| |||||||||||    
T  38065461 gaaactttcccataaaatcagaaaaaattcaaggatcatgactcctgtagaagagacttcttacgggactccgcccctcaaaat 38065378  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 17474684 - 17474599
Alignment:
Q  35 cagaaacttgcccataaaaagagaaaaaattcaagaac-atgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    ||||||||| |||| ||||  |||||||||||||| || |||||||    |||||||||||||||| ||||||| |||||||||||    
T  17474684 cagaaacttccccagaaaatcagaaaaaattcaaggaccatgactcccttagaagaaacttcttacgggactccgcccctcaaaat 17474599  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 41510294 - 41510230
Alignment:
Q  56 agaaaaaattcaagaac-atgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    |||||||||||||| || ||||||||   ||||| |||||||||  |||||||||||||||||||    
T  41510294 agaaaaaattcaaggaccatgactctcttagaaggaacttcttatgggactccacccctcaaaat 41510230  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 27795119 - 27795183
Alignment:
Q  56 agaaaaaattcaagaa-catgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    |||||||||||||| | ||||||||||  |||||| ||||||||| ||||||| |||||||||||    
T  27795119 agaaaaaattcaaggatcatgactcttgtagaagagacttcttacaggactccgcccctcaaaat 27795183  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 44572989 - 44572905
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaa-gaacatgactcttagagaagaaacttcttactggactccacccctcaaaatt 120  Q
    ||||||| |||||||||  ||||||||||||| || ||||||||  | |||||| ||||||||  ||||||| ||| ||||||||    
T  44572989 gaaacttccccataaaatcagaaaaaattcaaggaccatgactcccatagaagagacttcttaggggactccgcccatcaaaatt 44572905  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 52744732 - 52744648
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaa-gaacatgactcttagagaagaaacttcttactggactccacccctcaaaatt 120  Q
    ||||||| |||| ||||  ||||||||||||| || ||||||||| | |||||  |||||||||  ||||||||| |||||||||    
T  52744732 gaaacttccccagaaaatcagaaaaaattcaaggaccatgactctcatagaagggacttcttacaagactccacctctcaaaatt 52744648  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 26898692 - 26898609
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaagaac-atgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    |||||||||||| ||||  |||||||||||||| || ||||||| |  |||||  ||||||||| ||||||| |||||||||||    
T  26898692 gaaacttgcccaaaaaatcagaaaaaattcaaggaccatgactcctgtagaagggacttcttacaggactccgcccctcaaaat 26898609  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 28873276 - 28873359
Alignment:
Q  37 gaaacttgcccataaaaagagaaaaaattcaag-aacatgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    ||||||| |||| ||||  |||||||||||||| ||||||||||    |||||| ||||||||| ||||||| |||||||||||    
T  28873276 gaaacttccccagaaaattagaaaaaattcaaggaacatgactcccctagaagagacttcttacgggactccgcccctcaaaat 28873359  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 6228683 - 6228619
Alignment:
Q  56 agaaaaaattcaagaac-atgactcttagagaagaaacttcttactggactccacccctcaaaat 119  Q
    ||||||||||||||||| |||||||    ||||| |||||||||| ||||||| |||||||||||    
T  6228683 agaaaaaattcaagaaccatgactcccgtagaaggaacttcttacaggactcctcccctcaaaat 6228619  T

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