View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14158_high_11 (Length: 203)
Name: NF14158_high_11
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14158_high_11 |
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| [»] scaffold0605 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 4949474 - 4949613
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
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||||||||| |||| ||||| || ||| ||||||||||||||||| ||||||||||||||| | |||||| || |||||||||| |||||||||||||| |
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| T |
4949474 |
acaataggatgagataatggctgtctctgtgcaaccgtcatcaaagatactaagttcctcaaaatctcattctcggcccggagggttgtcacctcttcac |
4949573 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4949574 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
4949613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 1959287 - 1959392
Alignment:
| Q |
78 |
tgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcacgaagcttgtggttctcttgttcaagatga |
177 |
Q |
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||||||||||||||||| ||||||||||| ||||| ||| |||| |||||||||| ||||||||||| |||||| || ||||||||||||||||||||| |
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| T |
1959287 |
tgcaaccgtcatcaaagatactaagttccacaatatctccatttcggcccggagggttgtcacctcttgacgaagattatggttctcttgttcaagatga |
1959386 |
T |
|
| Q |
178 |
tccatt |
183 |
Q |
| |
|
|||||| |
|
|
| T |
1959387 |
tccatt |
1959392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0605 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0605
Description:
Target: scaffold0605; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 6536 - 6674
Alignment:
| Q |
50 |
caataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcacg |
149 |
Q |
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||||||||||||| ||||| || ||| ||||||||||||||||| ||||||||||||||| | |||||| || |||||||||| ||||||||||||||| |
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| T |
6536 |
caataggaagagataatggctgtctctgtgcaaccgtcatcaaagatactaagttcctcaaaatctcattctcggcccggagggttgtcacctcttcacg |
6635 |
T |
|
| Q |
150 |
aagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
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|
| T |
6636 |
aagcttgtggttctcttgttcaagatgatccattctgat |
6674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 16582456 - 16582317
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
||||||||| |||| ||||| || || ||||||||||||||||| ||||||||||||||| | |||||| || |||||||||| |||||||||||| | |
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|
| T |
16582456 |
acaataggatgagataatggctgtccctgtgcaaccgtcatcaaagatactaagttcctcaaaatctcattctcggcccggagggttgtcacctcttccc |
16582357 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
16582356 |
gaagcttgtggttctcttgttcaagatgatccattctgat |
16582317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 16612924 - 16613063
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
||||||||| |||| ||||| || || ||||||||||||||||| ||||||||||||||| | |||||| || |||||||||| |||||||||||| | |
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|
| T |
16612924 |
acaataggatgagataatggctgtccctgtgcaaccgtcatcaaagatactaagttcctcaaaatctcattctcggcccggagggttgtcacctcttccc |
16613023 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
16613024 |
gaagcttgtggttctcttgttcaagatgatccattctgat |
16613063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 28270667 - 28270528
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
||||||||| |||| |||||||| | | ||| | ||||||||||| |||||||||||| || | |||||| || | |||||||| |||||||||||||| |
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|
| T |
28270667 |
acaataggatgagataatggttgtctttgtgccatcgtcatcaaagatactaagttccttaagatctcattctcggtccggagggttgtcacctcttcac |
28270568 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
28270567 |
gaagcttgtggttctcttgttcaatatgatccattctgat |
28270528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 28305636 - 28305497
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
||||||||| |||| |||||||| | | ||| | ||||||||||| |||||||||||| || | |||||| || | |||||||| |||||||||||||| |
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|
| T |
28305636 |
acaataggatgagataatggttgtctttgtgccatcgtcatcaaagatactaagttccttaagatctcattctcggtccggagggttgtcacctcttcac |
28305537 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
28305536 |
gaagcttgtggttctcttgttcaatatgatccattctgat |
28305497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 28349417 - 28349278
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
||||||||| |||| |||||||| | | ||| | ||||||||||| |||||||||||| || | |||||| || | |||||||| |||||||||||||| |
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|
| T |
28349417 |
acaataggatgagataatggttgtctttgtgccatcgtcatcaaagatactaagttccttaagatctcattctcggtccggagggttgtcacctcttcac |
28349318 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
28349317 |
gaagcttgtggttctcttgttcaatatgatccattctgat |
28349278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 21865715 - 21865854
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
|||||||||||||| ||||| || ||| ||||||||||||||||| |||||| |||||||| | |||||| || ||||| |||| |||||||||||| | |
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|
| T |
21865715 |
acaataggaagagataatggctgtctctgtgcaaccgtcatcaaagctactaaattcctcaaaatctcattctcggcccgaagggttgtcacctcttctc |
21865814 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21865815 |
gaagcttgtggttctcttgttcaagatgatccattctgat |
21865854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 20379305 - 20379166
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
|||| |||| |||| |||||||| ||| ||| | ||||||||||| |||||||||||| || | |||||| || |||||||||| |||||||||||||| |
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|
| T |
20379305 |
acaacaggatgagataatggttgtctctgtgccatcgtcatcaaagatactaagttccttaaaatctcattctcggcccggagggttgtcacctcttcac |
20379206 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
20379205 |
gaagcttgtggttctcttcttcaagatgatccattctgat |
20379166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 21114061 - 21113922
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
||||||||| |||| |||| || ||| |||||| | |||||||| ||||||||||||||| | ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21114061 |
acaataggatgagataatgactgtctctgtgcaactgccatcaaagatactaagttcctcaaaatctcattttcagcccgaaggggtgtcacctcttcac |
21113962 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21113961 |
gaaacttgtggttctattgttcaagatgatccattttgat |
21113922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 30691173 - 30691312
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
|||| |||| |||| |||||||| ||| ||| | ||||||||||| |||||||||||| || | |||||| || |||||||||| |||||||||||||| |
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|
| T |
30691173 |
acaacaggatgagataatggttgtctctgtgccatcgtcatcaaagatactaagttccttaaaatctcattctcggcccggagggttgtcacctcttcac |
30691272 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
30691273 |
gaagcttgtggttctcttcttcaagatgatccattctgat |
30691312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 144094 - 144233
Alignment:
| Q |
49 |
acaataggaagagagaatggttgattctatgcaaccgtcatcaaaggtactaagttcctcaatacctcattttcagcccggagggctgtcacctcttcac |
148 |
Q |
| |
|
||||||||| |||| ||||| || ||| ||||||||| ||||||| || ||||||||| || | |||||| || | |||||||| |||||||||||||| |
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|
| T |
144094 |
acaataggatgagataatggctgtctctgtgcaaccgttatcaaagatagtaagttccttaaaatctcattctcggtccggagggttgtcacctcttcac |
144193 |
T |
|
| Q |
149 |
gaagcttgtggttctcttgttcaagatgatccattttgat |
188 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
144194 |
ggagcttgtggttctcttgttcaagatgatccattatgat |
144233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 3242673 - 3242723
Alignment:
| Q |
135 |
tgtcacctcttcacgaagcttgtggttctcttgttcaagatgatccatttt |
185 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
3242673 |
tgtcacctcttcgcgaagctcgtggacctcttgttcaagctgatccatttt |
3242723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 152446 - 152409
Alignment:
| Q |
135 |
tgtcacctcttcacgaagcttgtggttctcttgttcaa |
172 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
152446 |
tgtcacctcttcacgaagctcgtggatctcttgttcaa |
152409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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