View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14158_high_2 (Length: 400)
Name: NF14158_high_2
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14158_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 51808837 - 51809209
Alignment:
| Q |
1 |
caagaactttgaaatggtattaaaaccgttcaannnnnnnnnataaaatttgtcaatataggataggatagtcatggtgcaagaggaaaaagatacaatt |
100 |
Q |
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| T |
51808837 |
caagaactttgaaatggtattaaaaccgttcaatttttttttataaaatttgtctatataggataggatagtcatggtgcaagaggaaaaagatacaatt |
51808936 |
T |
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| Q |
101 |
tttccatttatcactctccagagaccatatataatatgtgactactttcaaacaatgcagaggcaagacactgtggtgtgggtataataactgtgaatga |
200 |
Q |
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| T |
51808937 |
tttccatttatcactctccagagaccatatataatatgtgactactttcaaacaatgcagaggcaagaca-----gtgtgggtataataattgtgaatga |
51809031 |
T |
|
| Q |
201 |
actattaatttaatcgtgtttctacgtttagcacaaaacatttgattcgtcgagattctttagcatacagaaaggatactaaaccaagttaaataaaaga |
300 |
Q |
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| T |
51809032 |
actattaatttaatcgtgtttctacgtttagcacaaaacatttgattcgtcgagattctttagcatacagaaaggatactaaaccaagttaaataaaaga |
51809131 |
T |
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| Q |
301 |
ggaatgcatgcttacaaatacaaattagaacgctgacgatggtgatatgtaatggaaattgaaagagacattccatgcgtgaag |
384 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51809132 |
ggaatgcatgct------tacaaattagaacgctgacgatggtgatatgtaatggaaattgaaagagacattccatgcgtgaag |
51809209 |
T |
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