View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14158_high_3 (Length: 360)
Name: NF14158_high_3
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14158_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 40880422 - 40880492
Alignment:
| Q |
7 |
tattctcaatattaaaagttgaattacatattttaagatttaattcttgttttttgaggggttccttgtaa |
77 |
Q |
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| T |
40880422 |
tattctcaatattaaaagttgaattacatattttaagatttaattcttgttttttgaggggttccttgtaa |
40880492 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 40880488 - 40880531
Alignment:
| Q |
303 |
tgtaatatgaatgaattttattcataatgttgatcaggattgtg |
346 |
Q |
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| T |
40880488 |
tgtaatatgaatgaattttattcataatgttgatcaggattgtg |
40880531 |
T |
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