View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14158_high_4 (Length: 314)
Name: NF14158_high_4
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14158_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 17871219 - 17871519
Alignment:
| Q |
1 |
atgaggtaactcaaataaactcccaactagaacatttaaagaaacaggttaatatgataaccaaatgaacaaatgctttagaagaaattttagaagttta |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| | |
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| T |
17871219 |
atgaggtaactcaaataaactctcaactagaacatttaaagaaacaggttaaaatgataaccacatgaacaaatgctctagaagaaattttagaagttca |
17871318 |
T |
|
| Q |
101 |
aatcagaggaaaaccaaatggtataggatttgatcataaaactcaaaacaagaaacatcaacacaagaattttgcctatgccttgaaggactatggaaag |
200 |
Q |
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| T |
17871319 |
aatcagaggaaaaccaaatggtataggattttatcataaagctcaaaacaagaaacatcaacacaagaattttgcctatgccttgaaggactatggaaag |
17871418 |
T |
|
| Q |
201 |
gataaaaggaacaaaaaggttcaaactataaaatttgttgttgctagagaaacatatgattccaccattagtcaatcaatgttgcaacattcagaagaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
17871419 |
gataaaaggaacaaaaaggttcaaactataaaatttgttgttgctagagaaacatatgattccaccattagtaaatcaatgctgcaacattcagaagaac |
17871518 |
T |
|
| Q |
301 |
a |
301 |
Q |
| |
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| |
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| T |
17871519 |
a |
17871519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 31406758 - 31406845
Alignment:
| Q |
116 |
aaatggtataggatttgatcataaaactcaaaacaagaaacatcaacacaagaattttgcctatgccttgaaggactatggaaaggat |
203 |
Q |
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| T |
31406758 |
aaatggtataggatttgatcatagagctcaaaaccataaacatcaacataagtcttttgcatatgctttgaaagactatggaatggat |
31406845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 290
Target Start/End: Original strand, 7588191 - 7588368
Alignment:
| Q |
113 |
accaaatggtataggatttgatcataaaactcaaaacaagaaacatcaacacaagaattttgcctatgccttgaaggactatggaaaggataaaaggaac |
212 |
Q |
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|
|||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||| ||||||||||||| || |||||||||| ||| | ||| |
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| T |
7588191 |
accaaatggtataggatttgatcacaaagctcaaaacaaaaaacaacaacacaagaatttttcctatgccttgaaagattatggaaaggttaagaagaaa |
7588290 |
T |
|
| Q |
213 |
aaaaaggttcaaactataaaatttgttgttgctagagaaacatatgattccaccattagtcaatcaatgttgcaacat |
290 |
Q |
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|| | | ||||| ||||||||||||||||||| ||| |||||||||| |||||| ||| ||||||||||||||||| |
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| T |
7588291 |
aaggaagctcaaaatataaaatttgttgttgctggaggaacatatgatcccaccacgagtaaatcaatgttgcaacat |
7588368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 13393793 - 13393846
Alignment:
| Q |
81 |
gaagaaattttagaagtttaaatcagaggaaaaccaaatggtataggatttgat |
134 |
Q |
| |
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|||||||| |||||| | |||||| ||||||||||||||||||||| |||||| |
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|
| T |
13393793 |
gaagaaatcttagaaagtcaaatcaaaggaaaaccaaatggtataggctttgat |
13393846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 27109608 - 27109427
Alignment:
| Q |
1 |
atgaggtaactcaaataaactcccaactagaacatttaaagaaacaggttaatatgataaccaaatgaacaaatgctttagaagaaattttagaagttta |
100 |
Q |
| |
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||||||||| ||| |||||||||| || || || |||||||| |||||||| ||||| |||| | |||| |||| | |||||||| || |||| | | |
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| T |
27109608 |
atgaggtaatacaactaaactcccatcttgagcacttaaagaagcaggttaaaatgatgaccataggaactaatgtgctggaagaaatcttggaaggtca |
27109509 |
T |
|
| Q |
101 |
aatcagaggaaaaccaaatggtataggatttgatcataaaactcaaaacaaga-aacatcaacacaagaattttgcctatgc |
181 |
Q |
| |
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|| | |||||||||||| |||||||| ||| || ||||| | | |||||| | || ||||| ||| || |||||||||||| |
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| T |
27109508 |
aaataaaggaaaaccaaaaggtataggctttaattataaagcactaaacaaaagaatatcaaaacatgagttttgcctatgc |
27109427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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