View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14158_low_10 (Length: 279)
Name: NF14158_low_10
Description: NF14158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14158_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2668507 - 2668687
Alignment:
| Q |
1 |
tgaaacagggtaagagttgactaaataaacaaacgttggccacattagtaatgcaagtggtggactaaaaccactagtaataatggctttgtttaaataa |
100 |
Q |
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| T |
2668507 |
tgaaacagagtaagagttgactaaataaacaaacgttggccacattagtaatgcaagtggtggactaaaaccactagtaataatggttttggttaaataa |
2668606 |
T |
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| Q |
101 |
ttaattatgttaaagcagttgtaaaaaattattgtataggcaaaacaacttcattaagaatgagattagaagtttgaatgt |
181 |
Q |
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| T |
2668607 |
ttaagtatgttaaagcagttgtaaaaaattattgtataggcaaaacaacttcattaagaatgagattagaagtttgaatgt |
2668687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 2668734 - 2668771
Alignment:
| Q |
228 |
cacgtattgtaagtaagtacaaacaaaatgaagtttgt |
265 |
Q |
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| T |
2668734 |
cacgtattgtaagtaagtacaaacaaaatgaagtttgt |
2668771 |
T |
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